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BioLiP
Download all results in tab-seperated text for 37 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3s3m:A (2.49) BS06 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... P14350 21719464 PDBbind: -logKd/Ki=7.40, IC50=40nM
    2 3s3n:A (2.49) BS06 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... P14350 21719464 PDBbind: -logKd/Ki=7.06, IC50=88nM
    3 3s3o:A (2.55) BS06 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... P14350 21719464 PDBbind: -logKd/Ki=7.57, IC50=27nM
    4 6rwn:A (3.1) BS04 DLU 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    5 6rwn:I (3.1) BS05 DLU 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    6 6u8q:A (4.67) BS05 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 32061936
    7 6u8q:C (4.67) BS07 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 32061936
    8 6vdk:A (4.5) BS06 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 32061936
    9 6vdk:C (4.5) BS06 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 32061936
    10 8fn7:A (2.8) BS07 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    11 8fn7:G (2.8) BS07 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    12 8fnd:A (3.0) BS07 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    13 8fnd:G (3.0) BS07 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    14 8fng:A (2.2) BS07 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    15 8fng:G (2.2) BS07 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    16 8fnh:A (2.5) BS07 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    17 8fnh:G (2.5) BS07 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    18 8fnj:A (2.4) BS07 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    19 8fnj:G (2.4) BS07 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    20 8fnl:A (2.8) BS07 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    21 8fnl:G (2.8) BS07 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    22 8fnm:A (2.8) BS07 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    23 8fnm:G (2.8) BS07 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    24 8fnn:A (2.7) BS07 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    25 8fnn:G (2.7) BS07 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    26 8fno:A (2.5) BS07 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    27 8fno:G (2.5) BS07 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    28 8fnp:A (2.2) BS08 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    29 8fnp:G (2.2) BS08 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    30 8w09:A (3.2) BS08 DLU ? GO:0003676 ... P12497 38582148
    31 8w09:I (3.2) BS08 DLU ? GO:0003676 ... P12497 38582148
    32 8w2r:A (3.23) BS08 DLU ? GO:0003676 ... P12497 38582148
    33 8w2r:I (3.23) BS08 DLU ? GO:0003676 ... P12497 38582148
    34 8w34:A (2.83) BS05 DLU ? GO:0003676 ... P12497 38582148
    35 8w34:I (2.83) BS05 DLU ? GO:0003676 ... P12497 38582148
    36 9c9m:A (2.01) BS07 DLU N/A N/A P12497 39066328
    37 9c9m:I (2.01) BS07 DLU N/A N/A P12497 39066328
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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