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BioLiP Library
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ee2:A (1.54) BS04 CHD 1.1.1.1 GO:0004022 ... P00328 11041853
    2 1ee2:B (1.54) BS04 CHD 1.1.1.1 GO:0004022 ... P00328 11041853
    3 1tw4:A (2.0) BS01 CHD ? GO:0005504 ... P80226 15518556
    4 1tw4:A (2.0) BS02 CHD ? GO:0005504 ... P80226 15518556
    5 1tw4:B (2.0) BS01 CHD ? GO:0005504 ... P80226 15518556
    6 1tw4:B (2.0) BS02 CHD ? GO:0005504 ... P80226 15518556
    7 3elz:A (2.2) BS01 CHD ? GO:0005504 ... Q6IMW5 18952094
    8 3elz:A (2.2) BS02 CHD ? GO:0005504 ... Q6IMW5 18952094
    9 3elz:A (2.2) BS03 CHD ? GO:0005504 ... Q6IMW5 18952094
    10 3elz:B (2.2) BS01 CHD ? GO:0005504 ... Q6IMW5 18952094
    11 3elz:B (2.2) BS02 CHD ? GO:0005504 ... Q6IMW5 18952094
    12 3elz:B (2.2) BS03 CHD ? GO:0005504 ... Q6IMW5 18952094
    13 3elz:B (2.2) BS04 CHD ? GO:0005504 ... Q6IMW5 18952094
    14 3elz:C (2.2) BS01 CHD ? GO:0005504 ... Q6IMW5 18952094
    15 3elz:C (2.2) BS02 CHD ? GO:0005504 ... Q6IMW5 18952094
    16 3elz:C (2.2) BS03 CHD ? GO:0005504 ... Q6IMW5 18952094
    17 3em0:A (2.2) BS01 CHD ? GO:0005504 ... Q6IMW5 18952094
    18 3em0:A (2.2) BS02 CHD ? GO:0005504 ... Q6IMW5 18952094
    19 3em0:A (2.2) BS03 CHD ? GO:0005504 ... Q6IMW5 18952094
    20 3em0:B (2.2) BS01 CHD ? GO:0005504 ... Q6IMW5 18952094
    21 3em0:B (2.2) BS02 CHD ? GO:0005504 ... Q6IMW5 18952094
    22 3em0:B (2.2) BS03 CHD ? GO:0005504 ... Q6IMW5 18952094
    23 3em0:B (2.2) BS04 CHD ? GO:0005504 ... Q6IMW5 18952094
    24 3em0:B (2.2) BS05 CHD ? GO:0005504 ... Q6IMW5 18952094
    25 6ie8:A (2.0) BS01 CHD ? GO:0000976 ... A0A0F6AY66 30655545 MOAD: Kd=60.5uM
    26 7eov:A (2.6) BS02 CHD 2.8.2.34 GO:0005737 ... Q8BGL3 34030040
    27 7eov:A (2.6) BS03 CHD 2.8.2.34 GO:0005737 ... Q8BGL3 34030040
    28 7o0k:A (1.83) BS01 CHD ? GO:0005504 ... P80226 33925706
    29 7o0k:A (1.83) BS02 CHD ? GO:0005504 ... P80226 33925706
    30 7o0k:B (1.83) BS01 CHD ? GO:0005504 ... P80226 33925706
    31 7o0k:B (1.83) BS02 CHD ? GO:0005504 ... P80226 33925706

    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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