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BioLiP Library
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2dys:A (2.2) BS08 DCW 7.1.1.9 GO:0004129 ... P00396 17332748
    2 2dys:C (2.2) BS01 PGV 7.1.1.9 GO:0004129 ... P00415 17332748
    3 2dys:C (2.2) BS02 DCW 7.1.1.9 GO:0004129 ... P00415 17332748
    4 2dys:C (2.2) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 17332748
    5 2dys:C (2.2) BS04 PEK 7.1.1.9 GO:0004129 ... P00415 17332748
    6 2dys:C (2.2) BS05 PEK 7.1.1.9 GO:0004129 ... P00415 17332748
    7 2dys:C (2.2) BS06 PGV 7.1.1.9 GO:0004129 ... P00415 17332748
    8 2dys:C (2.2) BS07 PGV 7.1.1.9 GO:0004129 ... P00415 17332748
    9 2dys:C (2.2) BS08 CDL 7.1.1.9 GO:0004129 ... P00415 17332748
    10 2dys:C (2.2) BS09 CDL 7.1.1.9 GO:0004129 ... P00415 17332748
    11 2dys:C (2.2) BS10 PEK 7.1.1.9 GO:0004129 ... P00415 17332748
    12 2dys:G (2.2) BS01 DMU 1.9.3.1 GO:0005743 ... P07471 17332748
    13 2dys:G (2.2) BS02 PEK 1.9.3.1 GO:0005743 ... P07471 17332748
    14 2dys:G (2.2) BS03 PEK 1.9.3.1 GO:0005743 ... P07471 17332748
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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