Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

Welcome to Yiheng Zhu's Homepage!

Yiheng Zhu Department of Computational Medicine and Bioinformatics University of Michigan 100 Washtenaw Ave Ann Arbor, MI 48109 Email: yihzhu@umich.edu

About Me

2019-current, visiting student, University of Michigan

2015-current, Ph.D student, Nanjing University of Science and Technology

2011-2015, bachelor, Nanjing Institute of Technology

Research Interests

Pattern Recognition

Bioinformatics

Machine Learning

Publications

Yi-Heng Zhu, Jun Hu, Fang Ge, Fuyi Li, Jiangning Song*, Yang Zhang*, Dong-Jun Yu*. Accurate Multi-Stage Prediction of Protein Crystallization Propensity Using Deep-Cascade Forest with Sequence-Based Features. Briefings in Bioinformatics. 2020:1-14.

Ming-Cai Chen, Yang Li, Yi-Heng Zhu, Fang Ge, Dong-Jun Yu*. SSCpred: Single-Sequence-Based Protein Contact Prediction Using Deep Fully Convolutional Network. Journal of Chemical Information and Modeling. 2020:1-9.

Yi-Heng Zhu, Chengxin Zhang, Rucheng Diao, Xiaogen Zhou, Peter Freddolino*, Dong-Jun Yu*, Yang Zhang* . MetaGOPlus: Improving Gene Ontology Prediction of Proteins Using Deep Residual Network with Hierarchical Classification. The 28th Conference on Intelligent Systems for Molecular Biology (ISMB 2020).

Yi-Heng Zhu, Jun Hu, Xiao-Ning Song, Dong-Jun Yu. DNAPred: Accurate Identification of DNA-binding Sites from Protein Sequence by Ensembled Hyperplane-Distance-Based Support Vector Machines. Journal of Chemical Information and Modeling. 2019, 59:3057-3071.

Yi-Heng Zhu, Jun Hu, Yong Qi, Xiao-Ning Song, Dong-Jun Yu. Boosting Granular Support Vector Machines for the Accurate Prediction of Protein-Nucleotide Binding Sites. Combinatorial Chemistry & High Throughput Screening. 2019:1-1.

Jun Hu, Xiao-Gen Zhou, Yi-Heng Zhu, Dong-Jun Yu, Guijun Zhang. TargetDBP: Accurate DNA-Binding Protein Prediction via Sequence-based Multi-View Feature Learning. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2019:1-1.

Xiao-Rong Bao, Yi-Heng Zhu, and Dong-Jun Yu*. DeepTF: Accurate Prediction of Transcription Factor Binding Sites from DNA Sequence by Combining Multi-Scale Convolutional Neural Network and Long Short-Term Memory Neural Network. International Conference on Intelligence Science and Big Data Engineering (IScIDE 2019).

Dong-Jun Yu, Yi-Heng Zhu, Jun Hu. An Overview of Biocomputing Methods of Targeting Protein-Ligand Binding Residues. Journal of Data Acquisition and Processing. 2018, 33(2):195-206.