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I-TASSER I-TASSER-MTD C-I-TASSER QUARK C-QUARK LOMETS COACH COFACTOR MetaGO MUSTER CEthreader SEGMER FG-MD ModRefiner REMO DEMO SPRING COTH Threpp BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign CR-I-TASSER GPCR-I-TASSER MAGELLAN BindProf BindProfX SSIPe ResQ IonCom STRUM DAMpred

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GPCR-RD is a database for experimental restaints of GPCRs. Although no solved X-ray or NMR structure is available for most GPCR sequences, numerous experiments have been performed on GPCRs to identify the critical residues and motifs. Experimental restraints were systematically collected from the literature using an automated text mining algorithm combined with manual validation, with the purpose of assisting GPCR 3-D structure modeling and function annotation. The GPCR-RD data are useful for GPCR 3D structure modeling, such as the GPCR-I-TASSER algorithm. The flow chart below summarizes the procedure for the extraction of experimental data and spatial restraints from literature and other resources.

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11002 entries in GPCR-RD.
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GPCR-RD: GPCR experimental restaint database
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Swiss-Prot ID Experimental Data Swiss-Prot ID Experimental Data Swiss-Prot ID Experimental Data
gabr1_rat V687-V713  [Contact Restraint] gabr1_rat V713-V835  [Contact Restraint] gabr1_mouse A633-A711  [Contact Restraint]
gabr1_mouse A711-A787  [Contact Restraint] gabr1_mouse A787-A807  [Contact Restraint] gabr1_mouse A807-A834  [Contact Restraint]
gabr1_mouse A834-N810  [Contact Restraint] gabr1_mouse N810-D720  [Contact Restraint] gabr1_mouse D720-C636  [Contact Restraint]
gabr1_mouse C636-C815  [Contact Restraint] gabr1_mouse C815-Q728  [Contact Restraint] gabr1_mouse Q728-G635  [Contact Restraint]
gabr1_mouse G635-G670  [Contact Restraint] gabr1_mouse G670-G714  [Contact Restraint] gabr1_mouse G714-G770  [Contact Restraint]
gabr1_mouse G770-G805  [Contact Restraint] gabr1_mouse G805-I684  [Contact Restraint] gabr1_mouse I684-I721  [Contact Restraint]
gabr1_mouse I721-I771  [Contact Restraint] gabr1_mouse I771-I808  [Contact Restraint] gabr1_mouse I808-I840  [Contact Restraint]
gabr1_mouse I840-L631  [Contact Restraint] gabr1_mouse L631-L668  [Contact Restraint] gabr1_mouse L668-L715  [Contact Restraint]
gabr1_mouse L715-L769  [Contact Restraint] gabr1_mouse L769-L814  [Contact Restraint] gabr1_mouse L814-L838  [Contact Restraint]
gabr1_mouse L838-K683  [Contact Restraint] gabr1_mouse K683-K776  [Contact Restraint] gabr1_mouse K776-M680  [Contact Restraint]
gabr1_mouse M680-M719  [Contact Restraint] gabr1_mouse M719-M806  [Contact Restraint] gabr1_mouse M806-F644  [Contact Restraint]
gabr1_mouse F644-F673  [Contact Restraint] gabr1_mouse F673-F772  [Contact Restraint] gabr1_mouse F772-F833  [Contact Restraint]
gabr1_mouse F833-P645  [Contact Restraint] gabr1_mouse P645-P820  [Contact Restraint] gabr1_mouse P820-S637  [Contact Restraint]
gabr1_mouse S637-S674  [Contact Restraint] gabr1_mouse S674-S837  [Contact Restraint] gabr1_mouse S837-T632  [Contact Restraint]
gabr1_mouse T632-T682  [Contact Restraint] gabr1_mouse T682-T712  [Contact Restraint] gabr1_mouse T712-T818  [Contact Restraint]
gabr1_mouse T818-T847  [Contact Restraint] gabr1_mouse T847-W667  [Contact Restraint] gabr1_mouse W667-W727  [Contact Restraint]
gabr1_mouse W727-W768  [Contact Restraint] gabr1_mouse W768-Y677  [Contact Restraint] gabr1_mouse Y677-Y710  [Contact Restraint]
gabr1_mouse Y710-Y773  [Contact Restraint] gabr1_mouse Y773-Y809  [Contact Restraint] gabr1_mouse Y809-Y845  [Contact Restraint]
gabr1_mouse Y845-V634  [Contact Restraint] gabr1_mouse V634-V687  [Contact Restraint] gabr1_mouse V687-V713  [Contact Restraint]
gabr1_mouse V713-V804  [Contact Restraint] gabr1_mouse V804-V841  [Contact Restraint] agtra_rat P162-G203  [Contact Restraint]
agtra_rat G203-F77  [Contact Restraint] agtra_rat F77-I38  [Contact Restraint] agtra_rat I38-F77  [Contact Restraint]
agtra_rat F77-W253  [Contact Restraint] agtra_rat W253-F77  [Contact Restraint] agtra_rat F77-L212  [Contact Restraint]
agtra_rat L212-L78  [Contact Restraint] agtra_rat L78-F293  [Contact Restraint] agtra_rat F293-I201  [Contact Restraint]
agtra_rat I201-F110  [Contact Restraint] agtra_rat F110-L143  [Contact Restraint] agtra_rat L143-L112  [Contact Restraint]
agtra_rat L112-F44  [Contact Restraint] agtra_rat F44-L112  [Contact Restraint] agtra_rat L112-I245  [Contact Restraint]
agtra_rat I245-F44  [Contact Restraint] ccr5_human N48-N71  [Contact Restraint] ccr5_human T82-Y37  [Contact Restraint]
ccr5_human V40-V83  [Contact Restraint] cxcr4_human A111-A83  [Contact Restraint] cxcr4_human A83-N56  [Contact Restraint]
cxcr4_human N56-D84  [Contact Restraint] cxcr4_human D84-G52  [Contact Restraint] cxcr4_human G52-H113  [Contact Restraint]
cxcr4_human H113-I44  [Contact Restraint] cxcr4_human I44-I89  [Contact Restraint] cxcr4_human I89-L50  [Contact Restraint]
cxcr4_human L50-L80  [Contact Restraint] cxcr4_human L80-M63  [Contact Restraint] cxcr4_human M63-F87  [Contact Restraint]
cxcr4_human F87-S46  [Contact Restraint] cxcr4_human S46-S81  [Contact Restraint] cxcr4_human S81-T51  [Contact Restraint]


Reference:

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