Zhang Lab

National University of Singapore

Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only

Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

GLASS

You can:

Go to the GPCR, ligand, or experimental data tables.
Go to the experimental data table for text mining information in PubMed ID column.
Go to the GPCR page and check other ligands which interact with it.
Go to the ligand page and check other GPCRs which it interacts with.
Go back to previous page.

GPCR

Name	Rhodopsin
Species	Homo sapiens (Human)
Gene	RHO
Synonym	Opsin-2 Rhodopsin
Disease	N/A
Length	348
Amino acid sequence	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA
UniProt	P08100
Protein Data Bank	N/A
GPCR-HGmod model	P08100
3D structure model	This predicted structure model is from GPCR-EXP P08100.
BioLiP	N/A
Therapeutic Target Database	N/A
ChEMBL	N/A
IUPHAR	N/A
DrugBank	BE0001200

Ligand

Name	69984-73-2
Molecular formula	C15H30O6
IUPAC name	(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-nonoxyoxane-3,4,5-triol
Molecular weight	306.399
Hydrogen bond acceptor	6
Hydrogen bond donor	4
XlogP	1.9
Synonyms	(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-nonoxyoxane-3,4,5-triol AX8257776 D0K1UI n-Nonyl -D-glucoside-(1,5);NGP Nonyl-beta-D-glucoside 50 mM Solution, 50 mM beta-D-Glucopyranoside, nonyl KB-206522 Nonyl ?-D-glucopyranoside SR-01000636074-1 (2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-(nonyloxy)oxane-3,4,5-triol AK136208 CCG-46372 MolPort-002-893-587 Nonyl beta-D-glucopyranoside, >=97.0% (GC) 4gby b-D-Glucopyranoside, nonyl N-NONYL-BETA-D-GLUCOPYRANOSIDE Nonyl-I(2)-D-glucopyranoside 984N732 BNG MCULE-5115555672 Nonyl b-D-glucopyranoside W0589 (2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-(nonyloxy)tetrahydro-2H-pyran-3,4,5-triol AKOS022171739 CHEMBL490225 n-nonyl -d-glucopyranoside NONYL-beta-D-GLUCOPYRANOSIDE 4gbz B-Nonylglucoside GC1498 Nonyl -D-glucopyranoside SCHEMBL136394 AC1L4EB7 C15H30O6 MFCD00063300 Nonyl beta-D-glucopyranoside ZINC15609263 [ Show all ]
Inchi Key	QFAPUKLCALRPLH-UXXRCYHCSA-N
Inchi ID	InChI=1S/C15H30O6/c1-2-3-4-5-6-7-8-9-20-15-14(19)13(18)12(17)11(10-16)21-15/h11-19H,2-10H2,1H3/t11-,12-,13+,14-,15-/m1/s1
PubChem CID	155448
ChEMBL	N/A
IUPHAR	N/A
BindingDB	N/A
DrugBank	DB02451
Structure SDF download
Lipinski's druglikeness	This ligand satisfies Lipinski's rule of five.

Experimental Data

Parameter	Value	Reference	Database source
	N/A	N/A	DrugBank

zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417