D-I-TASSER download
D-I-TASSER Suite is a package of standalone programs for distance-assisted protein structure prediction. The user manual is at README.txt. Please report bugs and questions at Zhang Lab Service System Discussion Board. The D-I-TASSER Suite is free for academic and non-profit
researchers.
D-I-TASSER download:
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For academic users, please click
here
to download the D-I-TASSER Suite.
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If you need D-I-TASSER Suite for a commercial use, please contact us through yangzhanglab
umich.edu.
D-I-TASSER sequence library download:
uniclust30_2017_04_hhsuite.tar.gz: Uniclust30 library (for D-I-TASSER, DeepMSA/DeepMS2/DeepMSA2-IMG).
uniref90.fasta.gz: UniRef90 library (for D-I-TASSER, DeepMSA/DeepMS2/DeepMSA2-IMG).
metaclust_2017_05.fasta.gz: Metaclust library (for D-I-TASSER, DeepMSA/DeepMS2/DeepMSA2-IMG).
bfd_metaclust_clu_complete_id30_c90_final_seq.sorted_opt.tar.gz: BFD library (for D-I-TASSER, DeepMS2/DeepMSA2-IMG).
mgy_clusters.clean.fasta: Mgnify library (for D-I-TASSER, DeepMS2/DeepMSA2-IMG).
mgy_clusters.clean.fasta.ssi: Mgnify library index (for D-I-TASSER, DeepMS2/DeepMSA2-IMG).
D-I-TASSER sequence library, IMG/JGI metagenome database, producted by Zhang Lab (for D-I-TASSER, DeepMSA2-IMG). We currently provide a demo library for testing, the full database will be released after the manuscript is published. We recommand you download the D-I-TASSER suite 2.0 first, then use download_lib.pl download the library with parameter " -MSA DeepMSA2-IMG "
JGI list
DB.fasta.bq
DB.fasta.bq.ssi
D-I-TASSER main library download:
CE (~7500MB): CEthreader library (for D-I-TASSER, LOMETS2 and CEthreader).
PDB (~1482MB):
non-redundant protein structures from PDB (for D-I-TASSER, LOMETS2/3, MUSTER, CEthreader and SEGMER).
MTX (~526MB):
Sequence profiles from PSI-BLAST search (for D-I-TASSER, LOMETS2/3, MUSTER and SEGMER).
DEP (~315MB):
Depth-dependent structure profiles of templates (for D-I-TASSER, LOMETS2/3, MUSTER and SEGMER).
SIG (~334MB):
Residue environmental profiles of templates (for D-I-TASSER, LOMETS2/3).
CNT (~133MB):
Side-chain center contacts of templates (for D-I-TASSER, LOMETS2/3).
dotProfile (~173MB):
Sequence profiles from PSI-BLAST search (for D-I-TASSER, LOMETS2/3).
stride (~3MB):
Seven state secondary structure assignment (for D-I-TASSER, LOMETS2/3).
summary1 (~66MB):
Sequence, secondary structure, solvent accessibilty, phi/psi angles (for D-I-TASSER, LOMETS2/3, MUSTER and SEGMER).
summary2 (~185MB):
Training data for phi/psi prediction and contact prediction by SVM (for D-I-TASSER, LOMETS2/3, MUSTER and SEGMER).
Bfactor (~155MB):
B-factor values of templates (for B-factor profile prediction).
AlphaFold2 library used in D-I-TASSER-AF2 pipeline download:
Please download the D-I-TASSER suite 2.0 first, then use download_lib.pl download the library with parameter " -ITmode DIT-AF2 "
Template library files
needed for the COFACTOR and COACH programs.
All libraries are weekly updated.
BioLiP: Ligand-protein binding database.
Instructions on how to configure the D-I-TASSER (D-I-TASSER-AF2), DeepMSA/DeepMSA2/DeepMSA2-IMG libraries are available at README.txt
