Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP

Structure of PDB 8s8e Chain i

Receptor sequence
>8s8ei (length=102) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
KGRRGKNKRELIYKEEGQEYAQITKMLGNGRVEASCFDGNKRMAHIRGKL
RKKVWMGQGDIILVSLRDFQDDQCDVVHKYNLDEARTLKNQGELPENAKI
NE
3D structure
PDB8s8e Structural basis of AUC codon discrimination during translation initiation in yeast.
Chaini
Resolution3.85 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 rna i K11 R13 R14 G15 K16 K23 L42 G43 N44 G45 R46 I61 R62 G63 K64 R66 K67 W70 M71 K1 R3 R4 G5 K6 K8 L27 G28 N29 G30 R31 I46 R47 G48 K49 R51 K52 W55 M56
BS02 rna i K11 R14 K67 W70 K1 R4 K52 W55
BS03 MG i H60 I61 R62 H45 I46 R47
External links
PDB RCSB:8s8e, PDBe:8s8e, PDBj:8s8e
PDBsum8s8e
PubMed39193907
UniProtP38912|IF1A_YEAST Eukaryotic translation initiation factor 1A (Gene Name=TIF11)

[Back to BioLiP]

zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417