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Structure of PDB 8p60 Chain SK0

Receptor sequence
>8p60SK0 (length=88) Species: 1358809 (Spraguea lophii 42_110) [Search protein sequence]
MQLSREDQVAIRKYLFRESICLVKDKDNGNHPELNINNKQVMKFLRSYVS
RGLVEKVFVWQHAYFLLKSEGVDVLREELYLDETEVPL
3D structure
PDB8p60 Spraguea lophii ribosome
ChainSK0
Resolution14.3 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 rna SK0 D25 R46 S50 F58 D25 R46 S50 F58
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit

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Molecular Function

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Cellular Component
External links

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