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Structure of PDB 6pmd Chain N

Receptor sequence >6pmdN (length=182) Species: 93061 (Staphylococcus aureus subsp. aureus NCTC 8325) [Search protein sequence] LIPTVIYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIY LYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGK RFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQS IEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE

3D structure PDB 6pmd Ureadepsipeptides as ClpP Activators. Chain N Resolution 2.21 Å 3D structure Catalytic site residues are labeled in the structure [Spin on] [Spin off] [Reset orientation] [High quality] [Low quality] [White background] [Black background] [Download] [Download structure with residue number starting from 1]

Enzymatic activity Catalytic site (original residue number in PDB) G69 S98 M99 H123 D172 Catalytic site (residue number reindexed from 1) G58 S87 M88 H112 D161 Enzyme Commision number 3.4.21.92: endopeptidase Clp.

Interaction with ligand Site # Ligand Ligand chain Binding residues on receptor (original residue number in PDB) Binding residues on receptor (residue number reindexed from 1) Binding affinity BS01 peptide N L49 F50 T80 H83 L38 F39 T69 H72

Gene Ontology Molecular Function GO:0004176 ATP-dependent peptidase activity GO:0004252 serine-type endopeptidase activity GO:0008236 serine-type peptidase activity GO:0051117 ATPase binding

	Biological Process
GO:0006508	proteolysis
GO:0006515	protein quality control for misfolded or incompletely synthesized proteins

	Cellular Component
GO:0005737	cytoplasm
GO:0009368	endopeptidase Clp complex

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