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BioLiP

Structure of PDB 5nss Chain M

Receptor sequence
>5nssM (length=388) Species: 573 (Klebsiella pneumoniae) [Search protein sequence]
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAALQDYLMWQ
VELTPFTDTDRAIATSIVDAVDDTGYLTIQIEDIVDSIGDDEIGLEEVEA
VLKRIQRFDPVGVAAKDLRDCLLIQLSQFAKETPWLEEARLIISDHLDLL
ANHDFRTLMRVTRLKEEVLKEAVNLIQSLDAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAMGNSARRSNLQEARWLIKSLESRN
DTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQ
KYLHSPRGIAAAAAAAAAAAAAAAGASSTAIRALVKKLIAAENPAKPLSD
SKLTSMLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV
3D structure
PDB5nss Structures of RNA Polymerase Closed and Intermediate Complexes Reveal Mechanisms of DNA Opening and Transcription Initiation.
ChainM
Resolution5.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna M X12 X13 X16 A454 X5 X6 X9 A365
Gene Ontology
Molecular Function
GO:0001216 DNA-binding transcription activator activity
GO:0003677 DNA binding
GO:0016987 sigma factor activity
Biological Process
GO:0006352 DNA-templated transcription initiation

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Molecular Function
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Biological Process
External links
PDB RCSB:5nss, PDBe:5nss, PDBj:5nss
PDBsum5nss
PubMed28579332
UniProtP06223|RP54_KLEOX RNA polymerase sigma-54 factor (Gene Name=rpoN)

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