Structure of PDB 8s8e Chain F

Receptor sequence

>8s8eF (length=206) Species: 284590 (Kluyveromyces lactis NRRL Y-1140) [Search protein sequence]

FVPVELATTIPVEIQQAQQEIKLFNKWSFEDVEVKDASLVDYIQISKPIY
VAHTAGRYANKRFRKAQCPIVERLTNSLMMNGRNNGKKLKAVRIVKHTLE
IINVLTDQNPLQVVVDAIINSGPREDTTRVGGGGAARRQAVDVSPLRRVN
QSIALLTIGAREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELER
VAKSNR

3D structure

PDB

8s8e Structural basis of AUC codon discrimination during translation initiation in yeast.

Chain

Resolution

3.85 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	F	K82 R83 K86 N97 L99 M101 N102 G103 R104 N105 N106 K108 K109 K111 R114 I115 A156 N171 R182 R187 N188 I189 I192	K61 R62 K65 N76 L78 M80 N81 G82 R83 N84 N85 K87 K88 K90 R93 I94 A135 N150 R161 R166 N167 I168 I171
BS02	rna	F	G154 G155	G133 G134

External links

PDB	RCSB:8s8e, PDBe:8s8e, PDBj:8s8e
PDBsum	8s8e
PubMed	39193907
UniProt	Q6CRA3

[Back to BioLiP]

zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417