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BioLiP

Structure of PDB 7mzc Chain C

Receptor sequence
>7mzcC (length=528) Species: 10116 (Rattus norvegicus) [Search protein sequence]
QTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELP
LSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDN
TKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAY
ILQREIHEPECRHLSRKFTEWAYGPVHSSLYDLSCIDTCEKNSVLEVIAY
SSSETPNRHDMLLVEPLNRLLQDKWDRFVKRIFYFNFFVYCLYMIIFTAA
AYYRPVEGLPPYKLKNTVGDYFRVTGEILSVSGGVYFFFRGIQYFLQRRP
SLKSLFVDSYSEILFFVQSLFMLVSVVLYFSQRKEYVASMVFSLAMGWTN
MLYYTRGFQQMGIYAVMIEKMILRDLCRFMFVYLVFLFGFSTAVVTLIED
GKYNSLYSTCLELFKFTIGMGDLEFTENYDFKAVFIILLLAYVILTYILL
LNMLIALMGETVNKIAQESKNIWKLQRAITILDTEKSFLKCMRKAFRSGK
LLQVGFTPDGKDDYRWCFRVDEVNWTTW
3D structure
PDB7mzc Structural snapshots of TRPV1 reveal mechanism of polymodal functionality.
ChainC
Resolution3.03 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 6EU C F587 L669 F386 L445 BindingDB: Ki=0.13nM,IC50=180nM
BS02 6EU C Y511 S512 L515 M547 T550 N551 Y554 Y310 S311 L314 M346 T349 N350 Y353 BindingDB: Ki=0.13nM,IC50=180nM
Gene Ontology
Molecular Function
GO:0005216 monoatomic ion channel activity
Biological Process
GO:0006811 monoatomic ion transport
GO:0055085 transmembrane transport
Cellular Component
GO:0016020 membrane

View graph for
Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:7mzc, PDBe:7mzc, PDBj:7mzc
PDBsum7mzc
PubMed34496225
UniProtO35433|TRPV1_RAT Transient receptor potential cation channel subfamily V member 1 (Gene Name=Trpv1)

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