Structure of PDB 6ola Chain AW

Receptor sequence

>6olaAW (length=196) Species: 85708 (Porcine circovirus 2) [Search protein sequence]

YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGG
SNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANA
LTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWL
RLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL

3D structure

PDB

6ola Structural characterization of the PCV2d virus-like particle at 3.3 angstrom resolution reveals differences to PCV2a and PCV2b capsids, a tetranucleotide, and an N-terminus near the icosahedral 3-fold axes.

Chain

Resolution

3.3 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	dna	AW	R48 K102 W106 Y156 Y160 Y218	R13 K67 W71 Y121 Y125 Y183

Gene Ontology

	Biological Process
GO:0019069	viral capsid assembly

View graph for
Biological Process

External links

PDB	RCSB:6ola, PDBe:6ola, PDBj:6ola
PDBsum	6ola
PubMed	31505320
UniProt	G0ZPI6

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