BioLiP

Structure of PDB 9fbf Chain A

Receptor sequence

>9fbfA (length=239) Species: 7955 (Danio rerio) [Search protein sequence]

HMLSDEQMQIINSLVEAHHKTYDDSYSDFVRFRPPVRRLSMLPHLADLVS
YSIQKVIGFAKMIPGFRDLTAEDQIALLKSSAIEIIMLRSNQSFSLEDMS
WSCGGPDFKYCINDVTKAGHTLELLEPLVKFQVGLKKLKLHEEEHVLLMA
ICLLSPDRPGVQDHVRIEALQDRLCDVLQAYIRIQHPGGRLLYAKMIQKL
ADLRSLNEEHSKQYRSLSFQPEHSMQLTPLVLEVFGSEV

3D structure

PDB

9fbf Design, Synthesis, and Biological Evaluation of New Type of Gemini Analogues with a Cyclopropane Moiety in Their Side Chain.

Chain

Resolution

3.01 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	A	I270 K274 R280 I288 K292 E446 E451 V452	I57 K61 R67 I75 K79 E233 E238 V239
BS02	A1IBM	A	Y175 Y179 S265 I299 R302 S303 S306 W314 C316 V328 H333 L337 H423	Y22 Y26 S52 I86 R89 S90 S93 W101 C103 V115 H120 L124 H210

External links

PDB	RCSB:9fbf, PDBe:9fbf, PDBj:9fbf
PDBsum	9fbf
PubMed	38858308
UniProt	Q9PTN2\|VDRA_DANRE Vitamin D3 receptor A (Gene Name=vdra)

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