Structure of PDB 6yby Chain A

Receptor sequence

>6ybyA (length=270) Species: 308116 (Dokdonia eikasta) [Search protein sequence]

TQELGANFENFIGATEGFSEIAYQFTSHILTLGYAVMLAGLLYFILTIKN
VDKKFQMSNILSAVVMVSAFLLLYAQAQNWTSSFTFNEEVGRYFLDPSGD
LFNNGYRYLNWLINVPMLLFQILFVVSLTTSKFSSVRNQFWFSGAMMIIT
GYIGQFYEVSNLTAFLVWGAISSAFFFHILWVMKKVINEGKEGISPAGQK
ILSNIWILFLISWTLYPGAYLMPYLTGVDGFLYSEDGVMARQLVYTIADV
SSKVIYGVLLGNLAITLSNK

3D structure

PDB

6yby Molecular mechanism of light-driven sodium pumping.

Chain

Resolution

1.8 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	NA	A	Y25 T83 F86	Y23 T81 F84
BS02	RET	A	W113 V117 L120 M149 S174 S175 F178 W215 Y218 P219 Y222 S254 K255	W111 V115 L118 M147 S172 S173 F176 W213 Y216 P217 Y220 S252 K253

Gene Ontology

	Cellular Component
GO:0016020	membrane

View graph for
Cellular Component

External links

PDB	RCSB:6yby, PDBe:6yby, PDBj:6yby
PDBsum	6yby
PubMed	32358514
UniProt	N0DKS8

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