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BioLiP

Structure of PDB 8xgc Chain 6

Receptor sequence
>8xgc6 (length=634) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
FKSRALNHVKKVDDVTGEKVREAFEQFLEDFSVQSTDTGEVEKVYRAQIE
FMKIYDLNTIYIDYQHLSMRENGALAMAISEQYYRFLPFLQKGLRRVVRK
YAPELLNTSSPEQTERVFQISFFNLPTVHRIRDIRSEKIGSLLSISGTVT
RTSEVRPELYKASFTCDMCRAIVDNVEQSFKYTEPTFCPNPSCENRAFWT
LNVTRSRFLDWQKVRIQENANEIPTGSMPRTLDVILRGDSVERAKPGDRC
KFTGVEIVVPDVTQLGLPGVKPSLNSGVTGLRSLGVRDLTYKISFLACHV
ISIGNERDQEVFLNSLSSDEINELKEMVKDEHIYDKLVRSIAPAVFGHEA
VKKGILLQMLGGVHKSTVEGIKLRGDINICVVGDPSTSKSQFLKYVVGFA
PRSVYTSGKASSAAGLTAAVVRDDYTIEAGALMLADNGICCIDEFDKMDI
SDQVAIHEAMEQQTISIAKAGIHATLNARTSILAAANPVGGRYNRKLSLR
GNLNMTAPIMSRFDLFFVILDDCNEKIDTELASHIVDLHMKPPFSAEQLR
RYIKYARTFKPILTKEARSYLVEKYKELRKDDAQGFSRSSYRITVRQLES
MIRLSEAIARANCVDEITPSFIAEAYDLLRQSII
3D structure
PDB8xgc Parental histone transfer caught at the replication fork.
Chain6
Resolution3.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.6.4.12: DNA helicase.
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 dna 6 V612 K665 A666 V420 K469 A470
BS02 ADP 6 V797 R798 E801 V595 R596 E599
BS03 ZN 6 C311 C338 C166 C193
BS04 ADP 6 V537 F538 P577 S578 T579 S580 K581 S582 Q583 L727 V345 F346 P385 S386 T387 S388 K389 S390 Q391 L531
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003678 DNA helicase activity
GO:0003688 DNA replication origin binding
GO:0003697 single-stranded DNA binding
GO:0004386 helicase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008270 zinc ion binding
GO:0009378 four-way junction helicase activity
GO:0016787 hydrolase activity
GO:0016887 ATP hydrolysis activity
GO:0017116 single-stranded DNA helicase activity
GO:0043138 3'-5' DNA helicase activity
GO:1990518 single-stranded 3'-5' DNA helicase activity
Biological Process
GO:0000727 double-strand break repair via break-induced replication
GO:0006260 DNA replication
GO:0006267 pre-replicative complex assembly involved in nuclear cell cycle DNA replication
GO:0006268 DNA unwinding involved in DNA replication
GO:0006270 DNA replication initiation
GO:0006271 DNA strand elongation involved in DNA replication
GO:0006279 premeiotic DNA replication
GO:0032508 DNA duplex unwinding
GO:1902969 mitotic DNA replication
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005656 nuclear pre-replicative complex
GO:0005737 cytoplasm
GO:0031261 DNA replication preinitiation complex
GO:0031298 replication fork protection complex
GO:0042555 MCM complex
GO:0043596 nuclear replication fork
GO:0071162 CMG complex
GO:0097373 MCM core complex

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Molecular Function

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Cellular Component
External links
PDB RCSB:8xgc, PDBe:8xgc, PDBj:8xgc
PDBsum8xgc
PubMed38448592
UniProtP53091|MCM6_YEAST DNA replication licensing factor MCM6 (Gene Name=MCM6)

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