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Structure of PDB 7ymm Chain 13 Binding Site BS07

Receptor Information >7ymm Chain 13 (length=344) Species: 329726 (Acaryochloris marina MBIC11017) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] MQTYGQTDVEYGWWSGNSRFSDYSGQFLAAHNGQIASMCFWAGSFTLFEV SRFNPDLPVYQQNLVCIPQLARAGWGVAAGGAVVDTYPYFAIAMIHLVAA AILGAGALYGVTKGPKVLADSEFSGAQRFHFEWDDFETQGRILGHHLLFL GAACLLFATWACTHGVYDPVAGEVRAISPSLNLVRFFKYGWATPGFNPYF VNNLEDVIGGHFFVSSLYIAGGIWHILVKPWPYTDKIFVKSGEALLAYAL AGLAFAGFNAAYFCSVNDVVFPVELFGPVLEAKLNVTPYFAETLDASDGG HTTRFWISNFHYYWAFYCLQGHLFHALRSYGFDFRRIPRALASL

Ligand information Ligand ID CL7 InChI InChI=1S/C54H72N4O6.Mg/c1-12-38-34(7)42-27-46-40(29-59)36(9)41(56-46)26-43-35(8)39(51(57-43)49-50(54(62)63-11)53(61)48-37(10)44(58-52(48)49)28-45(38)55-42)22-23-47(60)64-25-24-33(6)21-15-20-32(5)19-14-18-31(4)17-13-16-30(2)3;/h24,26-32,35,39,50H,12-23,25H2,1-11H3,(H2-2,55,56,57,58,59,61);/q-2;+4/p-2/b33-24+,43-26-;/t31-,32-,35+,39+,50-;/m1./s1 InChIKey FBCRYORFRGRJBC-ACDPFEIMSA-L SMILES Software SMILES OpenEye OEToolkits 1.7.5 CCC1=C(C2=Cc3c(c(c4n3[Mg]56N2C1=Cc7n5c8c(c7C)C(=O)[C@@H](C8=C9N6C(=C4)[C@H]([C@@H]9CCC(=O)OC/C=C(\C)/CCC[C@H](C)CCC[C@H](C)CCCC(C)C)C)C(=O)OC)C)C=O)C CACTVS 3.385 CCC1=C(C)C2=Cc3n4c(C=C5[C@@H](C)[C@H](CCC(=O)OC\C=C(C)\CCC[C@H](C)CCC[C@H](C)CCCC(C)C)C6=C7[C@@H](C(=O)OC)C(=O)c8c(C)c9C=C1[N@@]2[Mg]4([N@@]56)n9c78)c(C)c3C=O OpenEye OEToolkits 1.7.5 CCC1=C(C2=Cc3c(c(c4n3[Mg]56N2C1=Cc7n5c8c(c7C)C(=O)C(C8=C9N6C(=C4)C(C9CCC(=O)OCC=C(C)CCCC(C)CCCC(C)CCCC(C)C)C)C(=O)OC)C)C=O)C CACTVS 3.385 CCC1=C(C)C2=Cc3n4c(C=C5[CH](C)[CH](CCC(=O)OCC=C(C)CCC[CH](C)CCC[CH](C)CCCC(C)C)C6=C7[CH](C(=O)OC)C(=O)c8c(C)c9C=C1[N]2[Mg]4([N]56)n9c78)c(C)c3C=O Formula C54 H70 Mg N4 O6 Name CHLOROPHYLL D ChEMBL DrugBank ZINC PDB chain 7ymm Chain 13 Residue 507 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 7ymm Structure of a large photosystem II supercomplex from Acaryochloris marina. Resolution 3.6 Å Binding residue (original residue number in PDB) Q139 I142 L143 H146 F238 Y248 Binding residue (residue number reindexed from 1) Q139 I142 L143 H146 F238 Y248 Annotation score 4

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0016168 chlorophyll binding

	Biological Process
GO:0009767	photosynthetic electron transport chain
GO:0015979	photosynthesis
GO:0019684	photosynthesis, light reaction

	Cellular Component
GO:0009521	photosystem
GO:0016020	membrane
GO:0031676	plasma membrane-derived thylakoid membrane

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