BioLiP

Structure of PDB 4d1q Chain H Binding Site BS03

Receptor Information

>4d1q Chain H (length=509) Species: 7370 (Musca domestica) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

LKTVSADCKKEAIEKCAQWVVRDCRPFSAVSGSGFIDMIKFFIKVGAEYG
EHVNVEELLPSPITLSRKVTSDAKEKKALIGREIKSAVEKDGASATIDLW
TDNYIKRNFLGVTLHYHENNELRDLILGLKSLDFERSTAENIYKKLKAIF
SQFNVEDLSSIKFVTDRGANVVKSLANNIRINCSSHLLSNVLENSFEETP
ELNMPILACKNIVKYFKKANLQHRLRSSLKSECPTRWNSTYTMLRSILDN
WESVIQILSEAGETQRIVHINKSIIQTMVNILDGFERIFKELQTCSSPSL
CFVVPSILKVKEICSPDVGDVADIAKLKVNIIKNVRIIWEENLSIWHYTA
FFFYPPALHMQQEKVAQIKEFCLSKMEDLELINRMSSSIDLTSHSKDIST
TSFFFPQLTQNNSREPPVCPSDEFEFYRKEIVILSEDFKVMEWWNLNSKK
YPKLSKLALSLLSIPASSAASERTFSLAGNIITEKRNRIGQQTVDSLLFL
NSFYKNFCK

Ligand information

>4d1q Chain K (length=15) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

agagaacaacaacaa

Receptor-Ligand Complex Structure

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Structure summary

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PDB	4d1q Structural Basis of Hat Transposon End Recognition by Hermes, an Octameric DNA Transposase from Musca Domestica.
Resolution	3.4 Å
Binding residue (original residue number in PDB)	P108 F109 S110 K372 Q375 T376 C377 S378 R573 L577 K605
Binding residue (residue number reindexed from 1)	P26 F27 S28 K290 Q293 T294 C295 S296 R473 L477 K505

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0046983	protein dimerization activity

View graph for
Molecular Function

PDB	RCSB:4d1q, PDBe:4d1q, PDBj:4d1q
PDBsum	4d1q
PubMed	25036632
UniProt	Q25442