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Structure of PDB 6aax Chain C Binding Site BS02

Receptor Information >6aax Chain C (length=292) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] SQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSILNADVAELLV VEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDP PNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAER LAANTGSKQRSRLSVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPL IQPKIEQPFKLVEKVVQNVFQFRRKYCHRGLRMLFPEAQRLESTGRLLEL ADIDPTLRPRQLSISHFKSLCDVYRKMCDEDPQLFAYNFREE

Ligand information Ligand ID SAM InChI InChI=1S/C15H22N6O5S/c1-27(3-2-7(16)15(24)25)4-8-10(22)11(23)14(26-8)21-6-20-9-12(17)18-5-19-13(9)21/h5-8,10-11,14,22-23H,2-4,16H2,1H3,(H2-,17,18,19,24,25)/t7-,8+,10+,11+,14+,27-/m0/s1 InChIKey MEFKEPWMEQBLKI-FCKMPRQPSA-N SMILES Software SMILES CACTVS 3.341 C[S@@+](CC[C@H](N)C([O-])=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23 OpenEye OEToolkits 1.5.0 C[S+](CCC(C(=O)[O-])N)CC1C(C(C(O1)n2cnc3c2ncnc3N)O)O CACTVS 3.341 C[S+](CC[CH](N)C([O-])=O)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23 OpenEye OEToolkits 1.5.0 C[S@@+](CC[C@@H](C(=O)[O-])N)C[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O ACDLabs 10.04 [O-]C(=O)C(N)CC[S+](C)CC3OC(n2cnc1c(ncnc12)N)C(O)C3O Formula C15 H22 N6 O5 S Name S-ADENOSYLMETHIONINE ChEMBL CHEMBL1235831 DrugBank ZINC PDB chain 6aax Chain C Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 6aax Structural insights into dimethylation of 12S rRNA by TFB1M: indispensable role in translation of mitochondrial genes and mitochondrial function. Resolution 2.994 Å Binding residue (original residue number in PDB) F37 L38 G63 P64 I69 E85 K86 F90 D111 V112 N141 P143 Binding residue (residue number reindexed from 1) F4 L5 G30 P31 I36 E52 K53 F57 D78 V79 N108 P110 Annotation score 5

Enzymatic activity Enzyme Commision number 2.1.1.-

Gene Ontology Molecular Function GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity GO:0003677 DNA binding GO:0003723 RNA binding GO:0005515 protein binding GO:0008168 methyltransferase activity GO:0034246 mitochondrial transcription factor activity GO:1904047 S-adenosyl-L-methionine binding

	Biological Process
GO:0000154	rRNA modification
GO:0006364	rRNA processing
GO:0006391	transcription initiation at mitochondrial promoter
GO:0031167	rRNA methylation
GO:0032259	methylation

	Cellular Component
GO:0005739	mitochondrion
GO:0005759	mitochondrial matrix
GO:0042645	mitochondrial nucleoid

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