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Structure of PDB 6lcf Chain B Binding Site BS02

Receptor Information
>6lcf Chain B (length=403) Species: 216816 (Bifidobacterium longum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GIPAKGTDDGTEITLWTRSPLERQAKNVVEAYNKSHKNQVKLEIIPNDDM
EGKVGGASQTDSLPDILAGDVVRIPYWASEGIFTDITKQIDGLDNKADLQ
QGHIEAGTVDGAEYTLPFITDVSVMVWNKNLYKEAGLDPEQGPKSIDQFV
EQAKKVAALNKDGVAGSYLAGQSGGALVFDLFPSVWADGESVMNKDGSEA
TLDNDSMKGVLDAYKELANTTNGLGAGSKEETGATWTAPFANGKIGVMPY
PNTSTTALFDAEKDGGFEVGVAPIPGTKEGKTSTFLGGDAMGISKDSKHV
AQAWNFLYWLMQSDAQKEVFADQGDTASNIQTLKTAYKDADPRIQTINSV
IIDGNGQTPKSPAFNEAFNAAGSPWQLLVQNAVWGSGDLKADNKAVTDVL
SAQ
Ligand information
Ligand IDFUB
InChIInChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4+,5-/m0/s1
InChIKeyHMFHBZSHGGEWLO-KLVWXMOXSA-N
SMILES
SoftwareSMILES
CACTVS 3.341OC[C@@H]1O[C@H](O)[C@H](O)[C@H]1O
OpenEye OEToolkits 1.5.0C([C@H]1[C@@H]([C@H]([C@H](O1)O)O)O)O
OpenEye OEToolkits 1.5.0C(C1C(C(C(O1)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH]1O
ACDLabs 10.04OC1C(OC(O)C1O)CO
FormulaC5 H10 O5
Namebeta-L-arabinofuranose;
beta-L-arabinose;
L-arabinose;
arabinose
ChEMBL
DrugBank
ZINCZINC000004097027
PDB chain6lcf Chain D Residue 2 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6lcf Structural analysis of beta-L-arabinobiose-binding protein in the metabolic pathway of hydroxyproline-rich glycoproteins in Bifidobacterium longum.
Resolution1.92 Å
Binding residue
(original residue number in PDB)		R56 D108 D159 F217 G325
Binding residue
(residue number reindexed from 1)		R18 D70 D121 F179 G287
Annotation score4
Enzymatic activity
Enzyme Commision number ?
External links

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