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Structure of PDB 6g4e Chain A Binding Site BS02

Receptor Information >6g4e Chain A (length=451) Species: 306 (Pseudomonas sp.) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] SSLPEKDIQYQLHPYTNARLHQELGPLIIERGEGIYVYDDQGKGYIEAMA GLWSAALGFSNQRLIKAAEQQFNTLPFYHLFSHKSHRPSIELAEKLIEMA PVPMSKVFFTNSGSEANDTVVKMVWYLNNALGKPAKKKFISRVNGYHGIT VASASLTGLPGNQRGFDLPLPGFLHVGCPHHYRFALAGESEEHFADRLAV ELEQKILAEGPETIAAFIGEPLMGAGGVIVPPRTYWEKIQKVCRKYDILV IADEVICGFGRTGQMFGSQTFGIQPDIMVLSKQLSSSYQPIAAILINAPV FEGIADQSQALGALGHGFTGSGHPVATAVALENLKIIEEESLVEHAAQMG QLLRSGLQHFIDHPLVGEIRGCGLIAAVELVGDRVSKAPYQALGTLGRYM AGRAQEHGMITRAMGDAVAFCPPLIVNEQEVGMIVERFARALDDTTQWVG P

Ligand information Ligand ID ACA InChI InChI=1S/C6H13NO2/c7-5-3-1-2-4-6(8)9/h1-5,7H2,(H,8,9) InChIKey SLXKOJJOQWFEFD-UHFFFAOYSA-N SMILES Software SMILES ACDLabs 10.04 O=C(O)CCCCCN OpenEye OEToolkits 1.5.0 C(CCC(=O)O)CCN CACTVS 3.341 NCCCCCC(O)=O Formula C6 H13 N O2 Name 6-AMINOHEXANOIC ACID; AMINOCAPROIC ACID ChEMBL CHEMBL1046 DrugBank DB00513 ZINC ZINC000001529425 PDB chain 6g4e Chain A Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 6g4e Biochemical properties of a Pseudomonas aminotransferase involved in caprolactam metabolism. Resolution 2.45 Å Binding residue (original residue number in PDB) K287 R417 M419 Binding residue (residue number reindexed from 1) K282 R412 M414 Annotation score 1

Gene Ontology --> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Wed May 21 12:38:39 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

/var/www/html/BioLiP2/pdb.cgi in <module>()

1701     title=pdb2title(pdbid)

1702     if bs.startswith("BS"):

=> 1703         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

1704     else:

1705         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6g4e', asym_id = 'A', bs = 'BS02', title = 'Biochemical properties of a Pseudomonas aminotransferase involved in caprolactam metabolism.'

/var/www/html/BioLiP2/pdb.cgi in display_interaction(pdbid='6g4e', asym_id='A', bs='BS02', title='Biochemical properties of a Pseudomonas aminotransferase involved in caprolactam metabolism.')

1326         display_ec(ec,csaOrig,csaRenu)

1327     if go:

=> 1328         display_go(go,uniprot,pdbid,asym_id)

1329     return pubmed,uniprot

1330

global display_go = <function display_go>, go = '0008483,0030170', uniprot = '', pdbid = '6g4e', asym_id = 'A'

/var/www/html/BioLiP2/pdb.cgi in display_go(go='0008483,0030170', uniprot='', pdbid='6g4e', asym_id='A')

484         '''.replace("$namespace_link",namespace_link

485           ).replace("$namespace",namespace

=>  486           ).replace("$uniprot",u

487         ))

488         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>