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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

Structure of PDB 5inr Chain A Binding Site BS02

Receptor Information >5inr Chain A (length=461) Species: 936140 (Companilactobacillus farciminis KCTC 3681 = DSM 20184) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] CTSILVGKKASIDGSTLISRNDDGHEALDPQRFVVVNPEDQPRDYTSVIS KVNVKLPDDPQRYTSIPNSILTNGIWPAAGINSSNVAMSATETITTNSRV QGLDPFVENGLGEEDLVTVVLPYVKSAREGVKRLGSLLEEYGTYEPNGIS FADNEEVWWLETIGGHHWAAVRIPDDAYVVAPNRMNIDQFDFDSDDTLCS SDLKDLIDNNNLNPDFENYNLRHIFGSASIKDTVYNNPRTWYGQKFFSPD DTADDPMEQDLPFICHANRKISVEDVKFVLSSHFENTKYDVYGSGSQSDK TLFRPIGINRNHNVHILQIRNNVPTEIAGIHWLAYGANTFNTVVPFYANV NDTPVQYKNATGKFDLNNMYWLSCTTALLGDTDYDFYVDMRNDYELDAMS AYRKIQNDTDADISGQKDIEKYLENANKKLADVAFEKQNKLLGDMVTTGS NNMKLRYNLND

Ligand information Ligand ID PRO InChI InChI=1S/C5H9NO2/c7-5(8)4-2-1-3-6-4/h4,6H,1-3H2,(H,7,8)/t4-/m0/s1 InChIKey ONIBWKKTOPOVIA-BYPYZUCNSA-N SMILES Software SMILES OpenEye OEToolkits 1.5.0 C1C[C@H](NC1)C(=O)O CACTVS 3.341 OC(=O)[C@@H]1CCCN1 CACTVS 3.341 OC(=O)[CH]1CCCN1 OpenEye OEToolkits 1.5.0 C1CC(NC1)C(=O)O ACDLabs 10.04 O=C(O)C1NCCC1 Formula C5 H9 N O2 Name PROLINE ChEMBL CHEMBL54922 DrugBank DB00172 ZINC ZINC000000895360 PDB chain 5inr Chain A Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 5inr A C69-family cysteine dipeptidase from Lactobacillus farciminis; substrate recognition mechanism and autoproteolytic mechanism in enzyme maturation Resolution 1.652 Å Binding residue (original residue number in PDB) C9 N191 Y243 Binding residue (residue number reindexed from 1) C1 N183 Y235 Annotation score 4

Gene Ontology --> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Mon May 19 16:38:17 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

/var/www/html/BioLiP2/pdb.cgi in <module>()

1701     title=pdb2title(pdbid)

1702     if bs.startswith("BS"):

=> 1703         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

1704     else:

1705         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '5inr', asym_id = 'A', bs = 'BS02', title = 'A C69-family cysteine dipeptidase from Lactobaci...d autoproteolytic mechanism in enzyme maturation '

/var/www/html/BioLiP2/pdb.cgi in display_interaction(pdbid='5inr', asym_id='A', bs='BS02', title='A C69-family cysteine dipeptidase from Lactobaci...d autoproteolytic mechanism in enzyme maturation ')

1326         display_ec(ec,csaOrig,csaRenu)

1327     if go:

=> 1328         display_go(go,uniprot,pdbid,asym_id)

1329     return pubmed,uniprot

1330

global display_go = <function display_go>, go = '0006508,0016805,0070004', uniprot = '', pdbid = '5inr', asym_id = 'A'

/var/www/html/BioLiP2/pdb.cgi in display_go(go='0006508,0016805,0070004', uniprot='', pdbid='5inr', asym_id='A')

484         '''.replace("$namespace_link",namespace_link

485           ).replace("$namespace",namespace

=>  486           ).replace("$uniprot",u

487         ))

488         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>