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Structure of PDB 6lqs Chain Sc Binding Site BS01

Receptor Information >6lqs Chain Sc (length=80) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] LVQDLLHPTAASEARKHKLKTLVQGPRSYFLDVKCPGCLNITTVFSHAQT AVTCESCSTILCTPTGGKAKLSEGTSFRRK

Ligand information >6lqs Chain SA (length=1249) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] aagauaguuaucugguugauccugccaguagucauaugcuugucucaaag ccaugcaugucuaaguauaagcaauuuauacagugaaacugcgaaucagu uaucguuuauuugauagcaugguauaacugugguaauucuagagcuaaua caugcuaaucucgacccuuuggaagagauguauuuauuagagucuucgga cucuuugaugauucauaauaacuuuucgaaucgcauggccuugugcuggc gaugguucauucaaauuucugcccuaucaacuuucgaugguaggauagug gccuaccaugguuucaacggggcaggcgcgcaaauuacccaauccuaauu cagggagguagugacaauaaauaacgauacagggcccauucgggucuugu aauuggaaugaguacaauguaaauaccuuaacgaggaacaauuggagggc aagucuggugccagcagccgcgguaauuccagcuccaauagcguauauug cucguaguugaacuuugggcccgguuggccgguccggauuuccaacgggg ccuuuccuuuuuacuuugaaaaaauuagaguguucaaagcaggcguauug cucgaauauauuagcauggaauaauagaauagguugguucuauuucuagg accugauuaauagggacggucgggggcaucaguauucaauugucagaggu gaaauucuuggauuuauugaagacuaacuacugcgaaagcauuugccaag gacguuuucauuaaucaagaacguagggaucgggugguguuuuuuuaaug acccacucggcaccuugggggaguauggucgcaaggcugaaacuuaaagg aauugacggaagggcaccaccaggaguggagccugcggcucaacacgggg aaacucaccagguccagacacaauaaggauugacauucuugauuuugugg gugguggugcauugaugcccuuguucugggcccgcgcgcuacacugacgg agccagcgaguaacuccgucgugcugacgaggaauuccuaguaagcgcaa gucaucagcuugcguugauuacgucccugcccuuuguacacaccgcccgu cgcuaguaccgauugaauggcuuagugaggccucaggaucugcuuagaga agggggcaacuccaucucagagcggagaauuuggacaaacuuggucauuu agaggaacuaaaaggguuuccguaggugaaccugcggaaggaucauuaa ..............................<..<<<<<<...<......< <<.<<<..<<....<<....<<..........>>...>>.>>....<<<. .<<..<<....<<<.......<<....<<.<<<.....>>>.>>.....> >......<<<<<..<<....>>..>>>>><...<<<<<<..<<<<..>>> >....<<......>>>>>>>>.....>...<<<<..<<<.....>>>.>> >>....>>>...>>>>..>>>..<<....<<.....<<<<<<<<...... .>>>>>>>>.>>......>>.>>>>>>.........<<<....<<<.... .>>>..>>>.........>.....<<<<<<<..<<<<....>>>>..>>> >.>>>......<<..<...........>..>>.........<<<<<<... ....<<<....>>>..................>>>>>>..>>>>>>.>.< .<<...<<<.<<.....<<<<<.<<<<<..<.<...>.>..>>>>>.>>> >>........<<<<<.<<............<.......>...<<.....> >.............>>.>>..>>>..........<..<...<..>..>.. >.....>>....<<<<<<.<<...<<<<..<<..<<<<<<.<...<<<.. ....>>>......>.>>>>>>..>>.......<<....>>...>>>>..> .>>>>.>>>...>>>...>>.>..<<<..<<<<<<<<.<<<........> >>>>>>>>>>..>>>.....................<<.........>>. ....<<<<<<<<<<<<..<<.<<<<<<..<<<.<<<<............. .........<<<......<<<<<.....................>>>>>. ......<<........>>......>>>.....>>>>.>>>.....<<<<< <<...........>>>>>>>.............>>>>>>....<<<<<<< <.......>>>>>>>>......>>...>>>>>>>............>>>> >..<<<<.<<....<.<<<<.<..<<..<.<<......<<...<<..... .<<<<....>>>>......>>...>>......>>.>..>>..>.>>>>>. ...>>.>>>>.......<<<<<<<<<....>>>>>>>>>..........

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 6lqs Cryo-EM structure of 90 S small ribosomal subunit precursors in transition states. Resolution 3.8 Å Binding residue (original residue number in PDB) R17 H19 K20 L21 Q26 P28 S30 F47 H49 Q51 T67 G68 G69 K70 Binding residue (residue number reindexed from 1) R15 H17 K18 L19 Q24 P26 S28 F45 H47 Q49 T65 G66 G67 K68

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0003723 RNA binding GO:0003735 structural constituent of ribosome GO:0008270 zinc ion binding GO:0046872 metal ion binding

	Biological Process
GO:0000028	ribosomal small subunit assembly
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:0044391	ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for Molecular Function

View graph for Biological Process

View graph for Cellular Component