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Structure of PDB 8wq4 Chain S17P Binding Site BS01

Receptor Information >8wq4 Chain S17P (length=111) Species: 330779 (Sulfolobus acidocaldarius DSM 639) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] KKGQLVKNVGIEGVSAPSKTCDDEYCPYHGSLKVRGIVLEGKLIRARANR TGTVEREYIFYDSKYKRYERRRSRIHVHIPSCLEVKEGDNVIIGESRPIA KSISFVILGVK

Ligand information >8wq4 Chain A16S (length=1325) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] auuccgguugauccugccggacccgaccgcuaucgggguagggauaagcc augggagucuuacacucccggguaagggaguguggcggacggcugaguaa cacguggcuaaccuacccucgggacggggauaaccccgggaaacugggga uaauccccgauagggaaggaguccuggaaugguuccuucccuaaagggcu auagguauuucccguuuguagccgcccgaggauggggcuacggcccauca ggcugucggugggguaaaggcccaccgaaccuauaacggguaggggccgu ggaagcgggagccuccaguugggcacugagacaagggcccaggcccuacg gggcgcaccaggcgcgaaacguccccaaugcgcgaaagcgugagggcgcu accccgagugccuccgcaggaggcuuuuccccgcucuaaaaaggcggggg aauaagcggggggcaagucuggugucagccgccgcgguaauaccagcucc gcgaguggucggggugauuacugggccuaaagcgccuguagccggcccac caagucgccccuuaaaguccccggcucaaccggggaacugggggcgauac uggugggcuagggggcgggagaggcgggggguacucccggaguaggggcg aaauccuuagauaccgggaggaccaccaguggcggaagcgccccgcuaga acgcgcccgacggugagaggcgaaagccgggggucccggcuguaaacgau gcgggcuaggugucgaguaggcuuagagccuacucggugccgcagggaag ccguuaagcccgccgccuggggaguacggucgcaagacugaaacuuaaag gaauuggcgggggagcaccacaagggguggaaccugcggcucaauuggag ucaacgccuggaaucuuaccggggagaccgcaguaugacggccaggcuaa cgaccuugccugacucgcggagaggaggugcauggccgucgccagcucgu guugugaaauguccgguuaaguccggcaacgagcgagacccccaccccua guugguauucuggacuccgguccagaaccacacuagggggacugccggcg uaagccggaggaaggagggggccacggcaggucagcaugccccgaaaccg ggccgcacgcggguuacaauggcagggacaacgggaugcuaccucgaaag ggggagccaauccuuaaacccugccgcaguugggaucgagggcugaaacc cgcccucgugaacgaggaaucccuaguaaccgcgggucaacaacccgcgg ugaauacgucccugcuccuugcaca ...<<<<<...((((>>>>>.<<<<<<<<......<<<.<<......<<< .<<<...<...<.<<<<<........>>>>>.>.>.......<<..<... ..<<<<<<<..<<...<<<<<<<.<<<<<....<<<<........>>>>. ....>>>>>....<<.<<<.<<<.......>>>>>.>>.>......<<<< <<.<...........>.>>>>>>.>>>>>>>..>>>>>>>>>.<<<.... <<....<<<<<<<.......>>>>>>>..>>......>>>....<<<<<< ....>>>>...>>..>>>.<<<<<............>>>>>.<<<<<..> >>>>...>>>>>>.........<<<....<<<<....>>>>..>>>..>> ..>>>....<<<<<.....>>>>>...<<<<<<<.........>>>>>>> .....<<<<<((......<<<<.....<<..))>>.......>>>>.>>> >>...>>>>>>>>..........<<<((.....<<<<...<<<.<<<<<< <.<<..<<<<<......<<<<<<<.....>>>>>>>....>>>>>....> >>>>>>>>...<<<<<<.....<<<<<<<<<..<<<<<<<....<<.... ....>>.......>>>>>>>..>>.......<<....>>.>>>>>>>... .>>>.>>>...>>>...>>>>....<<<<<.....>>>>>.......... <<<<<<..<<<.<<<<<<<<<<.....>>>>>>>>>>.>>>...<<..)) >>.....>>>>>>.>>>..<<.....<<<<<....>>>>>...>>...)) ))..........<<<<<..<<.<<<<<...<<<<<<<.<<......<... .......>..........<<<..........<........<<.<<<.... ...>>>.>>.....>........<<.<<....<<<<<<<.....<<<<<. <<......>>..<<<<......>>>>...>>>>>....<<<<<.<<<<.< <.........<<<<<....>>>>>........>>.>>>>.....<<<<<. ...>>>>>........>>>>>.....>>.>>>...>>..>>>>.....>> >...>>..>>>>>>>.....<<<<<<<......<<..<<..<<<...... >>>..>>....>>.....>>>>>>>.............<<<<<....... .>>>>>.............>>>>>....<<<<<<<<.......>>>>>>> >......>>...>>>>>........

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 8wq4 Structural basis of translation inhibition by a valine tRNA-derived fragment Resolution 4.53 Å Binding residue (original residue number in PDB) K9 N10 G12 E26 Y27 K35 V36 R37 R47 N51 R52 K66 Y70 R72 R73 R74 R76 H78 E97 R99 P100 I101 A102 K103 S104 I105 Binding residue (residue number reindexed from 1) K7 N8 G10 E24 Y25 K33 V34 R35 R45 N49 R50 K64 Y68 R70 R71 R72 R74 H76 E95 R97 P98 I99 A100 K101 S102 I103

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0003735 structural constituent of ribosome GO:0019843 rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

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