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Structure of PDB 8wq4 Chain S13P Binding Site BS01

Receptor Information >8wq4 Chain S13P (length=147) Species: 330779 (Sulfolobus acidocaldarius DSM 639) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] QQQFKYIVRLFGQDVDGTMKLPYALAMIKGIGYNTAMIIIRKLNLDKDKR LGEISDEDIKKIENLLNNKIIPESPNWIYNRQKDYESGADMHLVTSDLIF YVRNDIERERRSRSWRGVRHSLGLKVRGQRTRTTGRTGATIGVRRAK

Ligand information >8wq4 Chain A16S (length=1325) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] auuccgguugauccugccggacccgaccgcuaucgggguagggauaagcc augggagucuuacacucccggguaagggaguguggcggacggcugaguaa cacguggcuaaccuacccucgggacggggauaaccccgggaaacugggga uaauccccgauagggaaggaguccuggaaugguuccuucccuaaagggcu auagguauuucccguuuguagccgcccgaggauggggcuacggcccauca ggcugucggugggguaaaggcccaccgaaccuauaacggguaggggccgu ggaagcgggagccuccaguugggcacugagacaagggcccaggcccuacg gggcgcaccaggcgcgaaacguccccaaugcgcgaaagcgugagggcgcu accccgagugccuccgcaggaggcuuuuccccgcucuaaaaaggcggggg aauaagcggggggcaagucuggugucagccgccgcgguaauaccagcucc gcgaguggucggggugauuacugggccuaaagcgccuguagccggcccac caagucgccccuuaaaguccccggcucaaccggggaacugggggcgauac uggugggcuagggggcgggagaggcgggggguacucccggaguaggggcg aaauccuuagauaccgggaggaccaccaguggcggaagcgccccgcuaga acgcgcccgacggugagaggcgaaagccgggggucccggcuguaaacgau gcgggcuaggugucgaguaggcuuagagccuacucggugccgcagggaag ccguuaagcccgccgccuggggaguacggucgcaagacugaaacuuaaag gaauuggcgggggagcaccacaagggguggaaccugcggcucaauuggag ucaacgccuggaaucuuaccggggagaccgcaguaugacggccaggcuaa cgaccuugccugacucgcggagaggaggugcauggccgucgccagcucgu guugugaaauguccgguuaaguccggcaacgagcgagacccccaccccua guugguauucuggacuccgguccagaaccacacuagggggacugccggcg uaagccggaggaaggagggggccacggcaggucagcaugccccgaaaccg ggccgcacgcggguuacaauggcagggacaacgggaugcuaccucgaaag ggggagccaauccuuaaacccugccgcaguugggaucgagggcugaaacc cgcccucgugaacgaggaaucccuaguaaccgcgggucaacaacccgcgg ugaauacgucccugcuccuugcaca ...<<<<<...((((>>>>>.<<<<<<<<......<<<.<<......<<< .<<<...<...<.<<<<<........>>>>>.>.>.......<<..<... ..<<<<<<<..<<...<<<<<<<.<<<<<....<<<<........>>>>. ....>>>>>....<<.<<<.<<<.......>>>>>.>>.>......<<<< <<.<...........>.>>>>>>.>>>>>>>..>>>>>>>>>.<<<.... <<....<<<<<<<.......>>>>>>>..>>......>>>....<<<<<< ....>>>>...>>..>>>.<<<<<............>>>>>.<<<<<..> >>>>...>>>>>>.........<<<....<<<<....>>>>..>>>..>> ..>>>....<<<<<.....>>>>>...<<<<<<<.........>>>>>>> .....<<<<<((......<<<<.....<<..))>>.......>>>>.>>> >>...>>>>>>>>..........<<<((.....<<<<...<<<.<<<<<< <.<<..<<<<<......<<<<<<<.....>>>>>>>....>>>>>....> >>>>>>>>...<<<<<<.....<<<<<<<<<..<<<<<<<....<<.... ....>>.......>>>>>>>..>>.......<<....>>.>>>>>>>... .>>>.>>>...>>>...>>>>....<<<<<.....>>>>>.......... <<<<<<..<<<.<<<<<<<<<<.....>>>>>>>>>>.>>>...<<..)) >>.....>>>>>>.>>>..<<.....<<<<<....>>>>>...>>...)) ))..........<<<<<..<<.<<<<<...<<<<<<<.<<......<... .......>..........<<<..........<........<<.<<<.... ...>>>.>>.....>........<<.<<....<<<<<<<.....<<<<<. <<......>>..<<<<......>>>>...>>>>>....<<<<<.<<<<.< <.........<<<<<....>>>>>........>>.>>>>.....<<<<<. ...>>>>>........>>>>>.....>>.>>>...>>..>>>>.....>> >...>>..>>>>>>>.....<<<<<<<......<<..<<..<<<...... >>>..>>....>>.....>>>>>>>.............<<<<<....... .>>>>>.............>>>>>....<<<<<<<<.......>>>>>>> >......>>...>>>>>........

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 8wq4 Structural basis of translation inhibition by a valine tRNA-derived fragment Resolution 4.53 Å Binding residue (original residue number in PDB) G34 P77 W79 N82 Q84 Y87 V104 D107 I108 W117 K127 R129 G130 Q131 R132 T133 R134 T135 T136 R138 T139 A141 R146 K149 Binding residue (residue number reindexed from 1) G32 P75 W77 N80 Q82 Y85 V102 D105 I106 W115 K125 R127 G128 Q129 R130 T131 R132 T133 T134 R136 T137 A139 R144 K147

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0003676 nucleic acid binding GO:0003723 RNA binding GO:0003735 structural constituent of ribosome

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome

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