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Structure of PDB 6pmd Chain N Binding Site BS01

Receptor Information >6pmd Chain N (length=182) Species: 93061 (Staphylococcus aureus subsp. aureus NCTC 8325) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] LIPTVIYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIY LYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGK RFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQS IEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE

Ligand information >6pmd Chain X (length=7) Species: 32630 (synthetic construct) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] tFSPKAK

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 6pmd Ureadepsipeptides as ClpP Activators. Resolution 2.21 Å Binding residue (original residue number in PDB) L49 F50 T80 H83 Binding residue (residue number reindexed from 1) L38 F39 T69 H72

Enzymatic activity Catalytic site (original residue number in PDB) G69 S98 M99 H123 D172 Catalytic site (residue number reindexed from 1) G58 S87 M88 H112 D161 Enzyme Commision number 3.4.21.92: endopeptidase Clp.

Gene Ontology Molecular Function GO:0004176 ATP-dependent peptidase activity GO:0004252 serine-type endopeptidase activity GO:0008236 serine-type peptidase activity GO:0051117 ATPase binding

	Biological Process
GO:0006508	proteolysis
GO:0006515	protein quality control for misfolded or incompletely synthesized proteins

	Cellular Component
GO:0005737	cytoplasm
GO:0009368	endopeptidase Clp complex

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