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BioLiP

Structure of PDB 5nss Chain M Binding Site BS01

Receptor Information
>5nss Chain M (length=388) Species: 573 (Klebsiella pneumoniae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAALQDYLMWQ
VELTPFTDTDRAIATSIVDAVDDTGYLTIQIEDIVDSIGDDEIGLEEVEA
VLKRIQRFDPVGVAAKDLRDCLLIQLSQFAKETPWLEEARLIISDHLDLL
ANHDFRTLMRVTRLKEEVLKEAVNLIQSLDAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAMGNSARRSNLQEARWLIKSLESRN
DTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQ
KYLHSPRGIAAAAAAAAAAAAAAAGASSTAIRALVKKLIAAENPAKPLSD
SKLTSMLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5nss Structures of RNA Polymerase Closed and Intermediate Complexes Reveal Mechanisms of DNA Opening and Transcription Initiation.
Resolution5.8 Å
Binding residue
(original residue number in PDB)		X12 X13 X16 A454
Binding residue
(residue number reindexed from 1)		X5 X6 X9 A365
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0001216 DNA-binding transcription activator activity
GO:0003677 DNA binding
GO:0016987 sigma factor activity
Biological Process
GO:0006352 DNA-templated transcription initiation

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Molecular Function
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Biological Process
External links
PDB RCSB:5nss, PDBe:5nss, PDBj:5nss
PDBsum5nss
PubMed28579332
UniProtP06223|RP54_KLEOX RNA polymerase sigma-54 factor (Gene Name=rpoN)

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