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Structure of PDB 5m1j Chain K2 Binding Site BS01

Receptor Information >5m1j Chain K2 (length=96) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] MLMPKEDRNKIHQYLFQEGVVVAKKDFNQAKHEEIDTKNLYVIKALQSLT SKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQERN

Ligand information >5m1j Chain 22 (length=1781) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] uaucugguugauccugccaguagucauaugcuugucucaaagauuaagcc augcaugucuaaguauaagcaauuuauacagugaaacugcgaauggcuca uuaaaucaguuaucguuuauuugauaguuccuuuacuacaugguauaacu gugguaauucuagagcuaauacaugcuuaaaaucucgacccuuuggaaga gauguauuuauuagauaaaaaaucaaugucuucggacucuuugaugauuc auaauaacuuuucgaaucgcauggccuugugcuggcgaugguucauucaa auuucugcccuaucaacuuucgaugguaggauaguggccuaccaugguuu caacggguaacggggaauaaggguucgauuccggagagggagccugagaa acggcuaccacauccaaggaaggcagcaggcgcgcaaauuacccaauccu aauucagggagguagugacaauaaauaacgauacagggcccauucggguc uuguaauuggaaugaguacaauguaaauaccuuaacgaggaacaauugga gggcaagucuggugccagcagccgcgguaauuccagcuccaauagcguau auuaaaguuguugcaguuaaaaagcucguaguugaacuuugggcccgguu ggccggucggauuuccaacggggccuuuccuucuggcuaaccuugagucc uuguggcucuuggcgaaccaggacuuuuacuuugaaaaaauuagaguguu caaagcaggcguauugcucgaauauauuagcauggaauaauagaauagga cguuugguucuauuuuguugguuucuaggaccaucguaaugauuaauagg gacggucgggggcaucaguauucaauugucagaggugaaauucuuggauu uauugaagacuaacuacugcgaaagcauuugccaaggacguuuucauuaa ucaagaacgaaaguuaggggaucgaagaugaucagauaccgucguagucu uaaccauaaacuaugccgacuagggaucgggugguguuuuuuuaaugacc cacucggcaccuuacgagaaaucaaagucuuuggguucuggggggaguau ggucgcaaggcugaaacuuaaaggaauugacggaagggcaccaccaggag uggagccugcggcuuaauuugacucaacacggggaaacucaccaggucca gacacaauaaggauugacagauugagagcucuuucuugauuuugugggug guggugcauggccguucuuaguugguggagugauuugucugcuuaauugc gauaacgaacgagaccuuaaccuacuaaauaguggugcuagcauuugcug guuauccacuucuuagagggacuaucgguuucaagccgauggaaguuuga ggcaauaacaggucugugaugcccuuagacguucugggccgcacgcgcgc uacacugacggagccagcgagucuaaccuuggccgagaggucuugguaau cuugugaaacuccgucgugcuggggauagagcauuguaauuauugcucuu caacgaggaauuccuaguaagcgcaagucaucagcuugcguugauuacgu cccugcccuuuguacacaccgcccgucgcuaguaccgauugaauggcuua gugaggccucaggaucugcuuagagaagggggcaacuccaucucagagcg gagaauuuggacaaacuuggucauuuagaggaacuaaaagucguaacaag guuuccguaggugaaccugcggaaggaucau ...<<<<<...[[[[>>>>>[[[[.((((((................[[[ .[[[..<<....<<....<<..........>>...>>.>>......{{.. ......[[[..{{..{{....[[[........................<< .<<<.....>>>.>>................<<<<<..<<....>>..>> >>>[...((((((......<<<<<<<<<<<....>>>............. .)))))).....]...<<<<..<<<.....>>>.>>>>....]]]...}} }}..]]].<<<....<<<....<<<<<<<<.......>>>>>>>>>>>.. ....>>>...<<<.<<<<....>>>>....>>>.}}.<<.<<<....... ...>>>.>>.<.<<....>>.>...]]]]]].........<<<....<<< .....>>>..>>>...............<<<<<..<.<<<......>>>. .>.>>.>>>......<<..<...........>..>>.........<<<<< ((....<.<<<<.....<<..))>>.......>>>>>>>>>>..)))))) ]]]].........[[[{{.......{{...[[[.[[....<<<<<<.<<< <<............>>>>>.>>>>>>.....<<<<<.............. .................>>>.>>...<<<<<.<<.......<<...<... ....>..<<<.....>>>....>>......>>.>>..>>>.........[ [...[[..((((....>>>>>>>>.))))..]]..]].....]]....<< <<<<.<<...<<<<..<<..<<<<<<.<...<<<......>>>......> .>>>>>>..>>.......<<....>>...>>>>...>>>>>.>>>...]] ]...}}......<<<<<<<...<...<<<<.<.....>.>>>>...>>>> >>>>..........<<<.<<.<<<..<<<<<<<<.<<<........>>>> >>>>>>>..>>>...<<..}}>>...>>.....>>>.]]].<<<...... <<<<....>>>>....>>>..]]]]..<<<<<.<<<<<<<..<<.<<<<< <..<<<.<<<<<<......<<........>>........<.<<<<<.<.. ..<<<<<........<<.<<<........>>>.>>......>>>>>...< <.<<<..<<.<<<<<<....<<<.<<<<<....>>>...<<<......>> >...>>.>>>....<<<<<.<<..<<<<..<<<<<.<<<<<<....>>>> >>...>>>>>..>>>>.>>....<<<<<<.....>>>>>>.......>>> >>....>>>.>>>.....>>>>>>>.....>.>>>>>>..>>.>>>>.>> >.....<<<<<<<......<<.....<<..<<<<....>>>>..>>.... >>.......>>>>>>>...........<<<<<<..........>>>>>>. .........>>>>>>....<<<<<<<<.......>>>>>>>>......>> ...>>>>>>>>>>.>>....<..<<.<..<<<<.<<....<<<<<<<<.< <<..<.<<..<...<<<<<<<........................>>>>> >>...>..>>.>..>>>.>>>>>>>>...>>.>>>>...>.>>...>... ..<<<<<<<<<....>>>>>>>>>.......

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 5m1j Structural insights into ribosomal rescue by Dom34 and Hbs1 at near-atomic resolution. Resolution 3.3 Å Binding residue (original residue number in PDB) M1 L2 M3 K5 K25 F27 L40 K44 Q47 S48 S51 F59 Y64 Binding residue (residue number reindexed from 1) M1 L2 M3 K5 K25 F27 L40 K44 Q47 S48 S51 F59 Y64

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0003723 RNA binding GO:0003735 structural constituent of ribosome GO:0005515 protein binding

	Biological Process
GO:0000054	ribosomal subunit export from nucleus
GO:0002181	cytoplasmic translation
GO:0034198	cellular response to amino acid starvation
GO:0045860	positive regulation of protein kinase activity

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for Molecular Function

View graph for Biological Process

View graph for Cellular Component