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Structure of PDB 6gz3 Chain Bb Binding Site BS01

Receptor Information >6gz3 Chain Bb (length=80) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] AKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTV VLCVGCSTVLCQPTGGKARLTEGCSFRRKQ

Ligand information >6gz3 Chain B1 (length=1708) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] uaccugguugauccugccaguagcauaugcuugucucaaagauuaagcca ugcaugucuaaguacgcacggccgguacagugaaacugcgaauggcucau uaaaucaguuaugguuccuuuggucgacuuggauaacugugguaauucua gagcuaauacaugccgacgggcgcugacccccuucgcgggggggaugcgu gcauuuaucagaucaaaaccaacccgggcuuuggugacucuagauaaccu cgggccgaucgcacgccccccguggcggcgacgacccauucgaacgucug cccuaucaacuuucgaugguagucgccgugccuaccauggugaccacggg ugacggggaaucaggguucgauuccggagagggagccugagaaacggcua ccacauccaaggaaggcagcaggcgcgcaaauuacccacucccgacccgg ggagguagugacgaaaaauaacaauacaggacucuuucgaggcccuguaa uuggaaugaguccacuuuaaauccuuuaacgaggauccauuggagggcaa gucuggugccagcagccgcgguaauuccagcuccaauagcguauauuaaa guugcugcaguuaaaaagcucguaguuggaucuugggagcggccccuugc cucucgcccgaagcguuuacuuugaaaaaauuagaguguucaaagcaggc ccgagccgccuggauaccgcagcuaggaauaauggaauaggaccgcgguu cuauuuuguugguuuucggaacugaggccaugauuaagagggacggccgg gggcauucguauugcgccgcuagaggugaaauucuuggaccggcgcaaga cggaccagagcgaaagcauuugccaagaauguuuucauuaaucaagaacg aaagucggagguucgaagacgaucagauaccgucguaguuccgaccauaa acgaugccgaccggcgaugcggcggcguuauucccaugacccgccgggca gcuuccgggaaaccaaagucuuuggguuccggggggaguaugguugcaaa gcugaaacuuaaaggaauugacggaagggcaccaccaggaguggagccug cggcuuaauuugacucaacacgggaaaccucacccggcccggacacggac aggauugacagauugauagcucuuucucgauuccgugggugguggugcau ggccguucuuaguugguggagcgauuugucugguuaauuccgauaacgaa cgagacucuggcaugcuaacuaguuacgcgacccccgagcgguaacuucu uagagggacaaguggcguucagccacccgagauugagcaauaacaggucu gugaugcccuuagauguccggggcugcacgcgcgcuacacugacuggcuc agcgugugccuacccuacgccggcaggcgcggguaacccguugaacccca uucgugauggggaucggggauugcaauuauuccccaugaacgaggaauuc ccaguaagugcgggucauaagcuugcguugauuaagucccugcccuuugu acacaccgcccgucgcuacuaccgauuggaugguuuagugaggcccucgg aucggccccgccguggcggagcgcugagaagacggucgaacuugacuauc uagaggaaguaaaagucguaacaagguuuccguaggugaaccugcggaag gaucauua ...<<<<<...[[[[>>>>>[[[.((((((.....{{.........[[[. [[[..<<....<<....<<..........>>...>>.>>......{{... .....[[[......{{....[[[[[....<<.....<<..<<.....>>. .>>......>>.........<<<<...<<<<<<....>>>>>>...>>>> [[..(((((.....<<<<<<<<<<<.>>....<......>..)))))... ...]]...<<<<.<<<<......>>>>>>>>.]].]]]...}}....]]] .<<<....<<<....<<<<<<<.........>>>>>>>>>>......>>> ...<<<.<<<<....>>>>....>>>.}}.<<.<<<..........>>>. >>.<.<<....>>.>...]]]]]].........<<<....<<<.....>> >..>>>......}}.......<<<<<<<<<.<<<....>>>..>>>>>.> >>>......<<..<...........>..>>.........<<<<<((.... ..<<<<.....<<..))>>.......>>>>.>>>>>..)))))).]]].. ..........{{.......{{...[[[.......<<<.....>>>....< .<.<<....>>>>....<<<<<.<.......<<...<.......>.<<<< .......>>>>...>>......>.>>>..>>............[..(((( ((.....>>>>>>>>>.))))))...]............<<<<<<..<.. .<<<<..<<..<<<<<<<<...<<<......>>>......>>>>>>>>.. >>.......<<....>>...>>>>..>..>>>.>>>...]]]...}}... ...<<<<<<....<...<<<<.<.....>.>>>>...>.>>>>>>..... .....<<<.<<.<<<..<.<<<<<<.<<<........>>>>>>>>>.>.. >>>...<<..}}>>...>>.....>>>.....<<<......<<<<....> >>>....>>>..]]]]..<<<<<.<<<<<<<..<<..<<<<<..<<<.<< <<........<<........>>..........<<<<<.<....<<<<<<. ......<<.<<<........>>>.>>.....>>>>>>...<<.<<<..<< .<<<<<<....<<<.<<<<......>>...<<<......>>>...>>.>> >....<<<...<...<<<<..<<<<..<<..<......>..>>>>>>..> >>>..>.....<<<<<.....>>>>>........>>>....>>>.>>>.. ...>>>>>>>.....>.>>>>>......>>>>.>>>.....<<.<<<... .....<.......<<<.<<<<....>>>>.>>>....>.........>>> .>>......<.....<<<<<..........>>>>>.....>.....>>>> >.....<<<<<<<<.......>>>>>>>>......>>...>>>>>>>>>> .>>....<..<<.<..<<<<.<<....<<<<<<<<.<<<..<<<<.<<.. .<<<<<.<<<<<..>>>>>...>>>>>...>>.>>>>..>>>.>>>>>>> >...>>.>>>>...>.>>...>.....<<<<<<<<<....>>>>>>>>>. ........

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 6gz3 tRNA Translocation by the Eukaryotic 80S Ribosome and the Impact of GTP Hydrolysis. Resolution 3.6 Å Binding residue (original residue number in PDB) R17 H19 K20 K21 K22 P28 S30 H49 Q51 P66 G68 G69 K70 Binding residue (residue number reindexed from 1) R14 H16 K17 K18 K19 P25 S27 H46 Q48 P63 G65 G66 K67

Gene Ontology --> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri May 23 02:09:36 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

/var/www/html/BioLiP2/pdb.cgi in <module>()

1701     title=pdb2title(pdbid)

1702     if bs.startswith("BS"):

=> 1703         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

1704     else:

1705         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6gz3', asym_id = 'Bb', bs = 'BS01', title = 'tRNA Translocation by the Eukaryotic 80S Ribosome and the Impact of GTP Hydrolysis.'

/var/www/html/BioLiP2/pdb.cgi in display_interaction(pdbid='6gz3', asym_id='Bb', bs='BS01', title='tRNA Translocation by the Eukaryotic 80S Ribosome and the Impact of GTP Hydrolysis.')

1326         display_ec(ec,csaOrig,csaRenu)

1327     if go:

=> 1328         display_go(go,uniprot,pdbid,asym_id)

1329     return pubmed,uniprot

1330

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '6gz3', asym_id = 'Bb'

/var/www/html/BioLiP2/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='6gz3', asym_id='Bb')

484         '''.replace("$namespace_link",namespace_link

485           ).replace("$namespace",namespace

=>  486           ).replace("$uniprot",u

487         ))

488         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>