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Structure of PDB 5f2u Chain B Binding Site BS01

Receptor Information
>5f2u Chain B (length=148) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKK
ILKCKAVSRELNFSSTEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNST
NTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLLVSTSRVRLFYV
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5f2u PDE6delta-mediated sorting of INPP5E into the cilium is determined by cargo-carrier affinity.
Resolution1.85 Å
Binding residue
(original residue number in PDB)
L54 C56 E88 E110 A111 A112 Q116 M117 M118 Y149
Binding residue
(residue number reindexed from 1)
L52 C54 E86 E108 A109 A110 Q114 M115 M116 Y147
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005095 GTPase inhibitor activity
GO:0005515 protein binding
GO:0031267 small GTPase binding
Biological Process
GO:0007601 visual perception
GO:0050953 sensory perception of light stimulus
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005929 cilium
GO:0016020 membrane
GO:0030659 cytoplasmic vesicle membrane
GO:0031410 cytoplasmic vesicle
GO:0042995 cell projection

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:5f2u, PDBe:5f2u, PDBj:5f2u
PDBsum5f2u
PubMed27063844
UniProtO43924|PDE6D_HUMAN Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta (Gene Name=PDE6D)

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