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BioLiP

Structure of PDB 8u0w Chain A Binding Site BS01

Receptor Information
>8u0w Chain A (length=1099) Species: 666 (Vibrio cholerae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NVSIEEFTHFDFQLVPEPSPLDLVITESLKNHIEVNGVKSGALLPLPFQT
GIGKTYTALNFLLQQMLEQVRSELKEENTGKKSKRLLYYVTDSVDNVVSA
KADLLKLIEKQTVKGEPRFTLEQQEYLKAQIVHLPNQSEQLLQCSDAVLN
DVLIGFNLNAERDVQAEWSAISGLRRHASNPEVKISLNRQAGYFYRNLID
RLQKKQKGADRVLLSGSLLASVETLLPGEKIRNGSAHVAFLTTSKFLKGF
HNTRSRYSPLRDLSGAVLIIDEIDKQNQVILSELCKQQAQDLIWAIRTEP
LRERLEEFGTNWNLAFAFNTEGANLNERPVRLFSDRSFTHVSSATHKLLL
TRFVNEADVIYQWFLGTMRKAVFQYWLEGTFQEAVQSLLTHFNLQEFESA
VYESFDTANKLSSSKSYHHTGLKLVEVAHNQGTRDTVNCKASFLNTSPSG
VLADMVDAGAVILGISATARADTVIHNFDFKYLNERLGNKLLSLSREQKQ
RVNNYYHSRRNYKDNGVVLTVKYLNSRDAFLDALLEEYKPEARSSHFILN
HYLGIAESEQAFVRSWLSKLLASIKAFISSPDNRYMLSLLNRTLDTTRQN
INDFIQFCCDKWAKEFNVKTKTFFGVNADWMRLVGYDEISKHLNTELGKV
VVFSTYASMGAGKNPDYAVNLALEGESLISVADVTYSTQLRSDIDSIYLE
KPTQLLLSDDYSHTANQLCQFHQILSLQENGELSPKSAENWCRQQLMGMS
RERSLQQYHQTSDYQSAVRKYIEQAVGRAGRTSLKRKQILLFVDSGLKEI
LAEESRDPSLFSHEYVALVNKAKSAGSIVEDRAVRRLFNLAQRNNKDGML
SIKALVHRLHNQPASKSDIQEWQDIRTQLLRYPTVAFQPERFNRLYLQSM
TKGYYRYQGNLDGDPNSFEFFDRVPYGDMVSEEDCSLATLVQNQYVRPWF
ERKGFACSWQKEANVMTPIMFTNIYKGALGEQAVEAVLTAFDFTFEEVPN
SIYERFDNRVIFAGIEQPIWLDSKSSKIALVEEEFGPSKFIYVNALGDTS
KPIRYLNSCFVETSPQLAKVIEIPALIDDSNADTNRTAVQELIKWLHHS
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8u0w Plasmid targeting and destruction by the DdmDE bacterial defence system.
Resolution2.99 Å
Binding residue
(original residue number in PDB)		V95 N137 Q138 R190 K246 K249 R257 F639 N668 R669 T670 N704 A705 A734 S735 T780 Q781 R828 E829 L832 Q833 H836
Binding residue
(residue number reindexed from 1)		V94 N136 Q137 R189 K245 K248 R256 F562 N591 R592 T593 N627 A628 A657 S658 T703 Q704 R751 E752 L755 Q756 H759
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