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Structure of PDB 6lcf Chain A Binding Site BS01

Receptor Information
>6lcf Chain A (length=403) Species: 216816 (Bifidobacterium longum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GIPAKGTDDGTEITLWTRSPLERQAKNVVEAYNKSHKNQVKLEIIPNDDM
EGKVGGASQTDSLPDILAGDVVRIPYWASEGIFTDITKQIDGLDNKADLQ
QGHIEAGTVDGAEYTLPFITDVSVMVWNKNLYKEAGLDPEQGPKSIDQFV
EQAKKVAALNKDGVAGSYLAGQSGGALVFDLFPSVWADGESVMNKDGSEA
TLDNDSMKGVLDAYKELANTTNGLGAGSKEETGATWTAPFANGKIGVMPY
PNTSTTALFDAEKDGGFEVGVAPIPGTKEGKTSTFLGGDAMGISKDSKHV
AQAWNFLYWLMQSDAQKEVFADQGDTASNIQTLKTAYKDADPRIQTINSV
IIDGNGQTPKSPAFNEAFNAAGSPWQLLVQNAVWGSGDLKADNKAVTDVL
SAQ
Ligand information
Ligand IDFUB
InChIInChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4+,5-/m0/s1
InChIKeyHMFHBZSHGGEWLO-KLVWXMOXSA-N
SMILES
SoftwareSMILES
CACTVS 3.341OC[C@@H]1O[C@H](O)[C@H](O)[C@H]1O
OpenEye OEToolkits 1.5.0C([C@H]1[C@@H]([C@H]([C@H](O1)O)O)O)O
OpenEye OEToolkits 1.5.0C(C1C(C(C(O1)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH]1O
ACDLabs 10.04OC1C(OC(O)C1O)CO
FormulaC5 H10 O5
Namebeta-L-arabinofuranose;
beta-L-arabinose;
L-arabinose;
arabinose
ChEMBL
DrugBank
ZINCZINC000004097027
PDB chain6lcf Chain C Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6lcf Structural analysis of beta-L-arabinobiose-binding protein in the metabolic pathway of hydroxyproline-rich glycoproteins in Bifidobacterium longum.
Resolution1.92 Å
Binding residue
(original residue number in PDB)		N85 G213 W274
Binding residue
(residue number reindexed from 1)		N47 G175 W236
Annotation score4
Enzymatic activity
Enzyme Commision number ?
External links

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