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Structure of PDB 2vx7 Chain A Binding Site BS01

Receptor Information >2vx7 Chain A (length=367) Species: 155077 (Cellvibrio japonicus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] LPALIDTQATAETRALYRNLAKLRYKHLLFGHEDSLAYGVHWEGDMDRSD VRDVTGANPAVYGWELGGLELGHTANLDAVNFEKMQHWIKAGYSRGGVIT ISWHVFNPVSGGNSWDKTPAVHELIPGGARHATLKAYLDTFVAFNEGLAD VDAQGNKHYPPIIFRPWHEHNGDWFWWGKGHASEQDYIALWRFTVHYLRD EKKLRNLIYAYSPDRSRIDMANFEAGYLYGYPGDAYVDIIGLDNYWDVGH EANTASADEQKAALTASLKQLVQIARSKGKIAALTATGNNRLTIDNFWTE RLLGPISADADASEIAYVMVWRNANLAREKSEQFFAPFPGQATADDFKRF YQSEVVLFEDELPPLYR

Ligand information Ligand ID BMA InChI InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5+,6-/m1/s1 InChIKey WQZGKKKJIJFFOK-RWOPYEJCSA-N SMILES Software SMILES CACTVS 3.341 OC[C@H]1O[C@@H](O)[C@@H](O)[C@@H](O)[C@@H]1O OpenEye OEToolkits 1.5.0 C(C1C(C(C(C(O1)O)O)O)O)O CACTVS 3.341 OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O OpenEye OEToolkits 1.5.0 C([C@@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)O)O)O)O)O ACDLabs 10.04 OC1C(O)C(OC(O)C1O)CO Formula C6 H12 O6 Name beta-D-mannopyranose; beta-D-mannose; D-mannose; mannose ChEMBL DrugBank ZINC ZINC000003830679 PDB chain 2vx7 Chain B Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 2vx7 The Cellvibrio Japonicus Mannanase Cjman26C Displays a Unique Exo-Mode of Action that is Conferred by Subtle Changes to the Distal Region of the Active Site. Resolution 1.8 Å Binding residue (original residue number in PDB) H156 E221 Y297 W373 Binding residue (residue number reindexed from 1) H104 E169 Y245 W321 Annotation score 4

Gene Ontology --> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Tue May 20 23:19:46 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

/var/www/html/BioLiP2/pdb.cgi in <module>()

1701     title=pdb2title(pdbid)

1702     if bs.startswith("BS"):

=> 1703         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

1704     else:

1705         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '2vx7', asym_id = 'A', bs = 'BS01', title = 'The Cellvibrio Japonicus Mannanase Cjman26C Disp...Changes to the Distal Region of the Active Site. '

/var/www/html/BioLiP2/pdb.cgi in display_interaction(pdbid='2vx7', asym_id='A', bs='BS01', title='The Cellvibrio Japonicus Mannanase Cjman26C Disp...Changes to the Distal Region of the Active Site. ')

1326         display_ec(ec,csaOrig,csaRenu)

1327     if go:

=> 1328         display_go(go,uniprot,pdbid,asym_id)

1329     return pubmed,uniprot

1330

global display_go = <function display_go>, go = '0004553,0006080,0016985', uniprot = '', pdbid = '2vx7', asym_id = 'A'

/var/www/html/BioLiP2/pdb.cgi in display_go(go='0004553,0006080,0016985', uniprot='', pdbid='2vx7', asym_id='A')

484         '''.replace("$namespace_link",namespace_link

485           ).replace("$namespace",namespace

=>  486           ).replace("$uniprot",u

487         ))

488         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>