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Structure of PDB 6ha8 Chain V

Receptor sequence

>6ha8V (length=541) Species: 224308 (Bacillus subtilis subsp. subtilis str. 168)

KEIVTLTNVSYEVKDQTVFKHVNASVQQGDIIGIIGKNGAGKSTLLHLIH
NDLAPAQGQILRKDIKLALVEQETAAYSFADQTPAEKKLLEKWHVPLRDF
HQLSGGEKLKARLAKGLSEDADLLLLDQPTNHLDEKSLQFLIQQLKHYNG
TVILVSHDRYFLDEAATKIWSLEDQTLIEFKGNYSGYMKFREKKRLTQQR
EYEKQQKMVERIEAQMNGLASWSEKAHAQSTKKEGFKEYHRVKAKRTDAQ
IKSKQKRLEKELEKAKAEPVTPEYTVRFSIDTTHKTGKRFLEVQNVTKAF
GERTLFKNANFTIQHGEKVAIIGPNGSGKTTLLNIILGQETAEGSVWVSP
SANIGYLTQEVFDLPLEQTPEELFENETFKARGHVQNLMRHLGFTAAQWT
EPIKHMSMGERVKIKLMAYILEEKDVLILDQPTNHLDLPSREQLEETLSQ
YSGTLLAVSHDRYFLEKTTNSKLVISNNGIEKQLAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

3D structure

• PDB: 6ha8 Structural basis for antibiotic resistance mediated by theBacillus subtilisABCF ATPase VmlR.
• Chain: V
• Resolution: 3.5 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	V	K2 E3 P85 K89 E92 K93 H148 K182 K194 T198 R201 Q216 W223 A227 H228 T232 G236 F237 K238 E239 Y240 R242 K244 K246 R247 D249 S254 K255 K257 R258 K261	K1 E2 P84 K88 E91 K92 H147 K181 K193 T197 R200 Q215 W222 A226 H227 T231 G235 F236 K237 E238 Y239 R241 K243 K245 R246 D248 S253 K254 K256 R257 K260
BS02	rna	V	K286 G288 R290 W348 S350 S352	K285 G287 R289 W347 S349 S351
BS03	rna	V	K226 R383 H385 N388 L389 H392	K225 R382 H384 N387 L388 H391
BS04	ATP	V	Q103 S105 G106 G107 F301 R304 N326 G327 S328 G329 K330 T331 T332 Q360 H461	Q102 S104 G105 G106 F300 R303 N325 G326 S327 G328 K329 T330 T331 Q359 H460
BS05	ATP	V	V14 N39 G40 A41 G42 K43 S44 T45 Q399 E402 M407 S408 G410	V13 N38 G39 A40 G41 K42 S43 T44 Q398 E401 M406 S407 G409

Gene Ontology

Molecular Function

• GO:0005524 ATP binding
• GO:0016887 ATP hydrolysis activity
• GO:0050825 ice binding

External links

• PDB: RCSB:6ha8, PDBe:6ha8, PDBj:6ha8
• PDBsum: 6ha8
• PubMed: 30126986
• UniProt: P39115|VMLR_BACSU Ribosome protection protein VmlR (Gene Name=vmlR)

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