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BioLiP

Structure of PDB 1yi2 Chain K

Receptor sequence
>1yi2K (length=132) Species: 2238 (Haloarcula marismortui) [Search protein sequence]
MEALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLG
DKITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDE
NEDPRGTELKGPIAREVAQRFGSVASAATMIV
3D structure
PDB1yi2 Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance.
ChainK
Resolution2.65 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna K M1 A3 T9 G11 E13 K14 S16 K30 I32 S33 V34 H35 G36 Y37 S38 G39 T40 K41 N42 R43 L44 T54 S56 R66 R77 K78 R81 R87 M1 A3 T9 G11 E13 K14 S16 K30 I32 S33 V34 H35 G36 Y37 S38 G39 T40 K41 N42 R43 L44 T54 S56 R66 R77 K78 R81 R87
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
GO:0070180 large ribosomal subunit rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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External links
PDB RCSB:1yi2, PDBe:1yi2, PDBj:1yi2
PDBsum1yi2
PubMed15851032
UniProtP22450|RL14_HALMA Large ribosomal subunit protein uL14 (Gene Name=rpl14)

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