Structure of PDB 6db8 Chain H

Receptor sequence

>6db8H (length=224) Species: 32630 (synthetic construct) [Search protein sequence]

ISEVQLVESGGGLVQPGGSLRLSCAASGFYISYSSIHWVRQAPGKGLEWV
ASISPYSGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCAR
QGYRRRSGRGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKGGTAALGCLV
KDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQ
TYICNVNHKPSNTKVDKKVEPKSC

3D structure

PDB

6db8 Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif.

Chain

Resolution

1.86541 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	H	F30 Y31 Y34 P56 Y57 S58 S60 Y62 Q102 Y104 R105 R106 R110	F29 Y30 Y33 P55 Y56 S57 S59 Y61 Q101 Y103 R104 R105 R109

External links

PDB	RCSB:6db8, PDBe:6db8, PDBj:6db8
PDBsum	6db8
PubMed	30382099

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