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BioLiP

Structure of PDB 7rd1 Chain D

Receptor sequence
>7rd1D (length=942) Species: 1123958 (Chimpanzee adenovirus Y25) [Search protein sequence]
MATPSMLPQWAYMHIAGQDASEYLSPGLVQFARATDTYFSLGNKFRNPTV
APTHDVTTDRSQRLTLRFVPVDREDNTYSYKVRYTLAVGDNRVLDMASTY
FDIRGVLDRGPSFKPYSGTAYNSLAPKGAPNSSQWEQKKAGNGDTMETHT
FGVAPMGGENITIDGLQIGTDATADQDKPIYADKTFQPEPQVGEENWQET
ESFYGGRALKKDTSMKPCYGSYARPTNVKGGQAKLKVGADGVPTKEFDID
LAFFDTPGGTVNGQDEYKADIVMYTENTYLETPDTHVVYKPGKDDASSEI
NLVQQSMPNRPNYIGFRDNFIGLMYYNSTGNMGVLAGQASQLNAVVDLQD
RNTELSYQLLLDSLGDRTRYFSMWNQAVDSYDPDVRIIENHGVEDELPNY
CFPLDGSGTNAAYQGVKVKNGNDGDVESEWENDDTVAARNQLCKGNIFAM
EINLQANLWRSFLYSNVALYLPDSYKYTPANITLPTNTNTYDYMNGRVVP
PSLVDAYINIGARWSLDPMDNVNPFNHHRNAGLRYRSMLLGNGRYVPFHI
QVPQKFFAIKSLLLLPGSYTYEWNFRKDVNMILQSSLGNDLRTDGASISF
TSINLYATFFPMAHNTASTLEAMLRNDTNDQSFNDYLSAANMLYPIPANA
TNVPISIPSRNWAAFRGWSFTRLKTKETPSLGSGFDPYFVYSGSIPYLDG
TFYLNHTFKKVSITFDSSVSWPGNDRLLTPNEFEIKRTVDGEGYNVAQCN
MTKDWFLVQMLAHYNIGYQGFYVPEGYKDRMYSFFRNFQPMSRQVVDEVN
YKDYQAVTLAYQHNNSGFVGYLAPTMRQGQPYPANYPYPLIGKSAVTSVT
QKKFLCDRVMWRIPFSSNFMSMGALTDLGQNMLYANSAHALDMNFEVDPM
DESTLLYVVFEVFDVVRVHQPHRGVIEAVYLRTPFSAGNATT
3D structure
PDB7rd1 ChAdOx1 interacts with CAR and PF4 with implications for thrombosis with thrombocytopenia syndrome.
ChainD
Resolution3.07 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide D A20 A32 R33 D36 L41 G42 N43 F45 R46 N47 A20 A32 R33 D36 L41 G42 N43 F45 R46 N47
BS02 peptide D Y777 R780 S871 G873 Y777 R780 S871 G873
BS03 peptide D T49 V50 T619 N634 Y636 L637 S638 R862 F913 T49 V50 T619 N634 Y636 L637 S638 R862 F913
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Biological Process
GO:0046718 symbiont entry into host cell
GO:0075521 microtubule-dependent intracellular transport of viral material towards nucleus
Cellular Component
GO:0019028 viral capsid
GO:0039623 T=25 icosahedral viral capsid
GO:0042025 host cell nucleus
GO:0043657 host cell

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Cellular Component
External links

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