Structure of PDB 1ffo Chain D

Receptor sequence
>1ffoD (length=273) Species: 10090 (Mus musculus) [Search protein sequence]
PHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPW
MEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSGC
DLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSG
AAEHYKAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTL
RCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPL
GKEQNYTCRVYHEGLPEPLTLRW
3D structure
PDB1ffo Peptidic termini play a significant role in TCR recognition.
ChainD
Resolution2.65 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide D Y7 E63 K66 Q70 W73 S77 N80 Y84 Q97 S99 F116 Y123 T143 K146 W147 H155 Y156 Y159 E163 W167 Y171 Y6 E62 K65 Q69 W72 S76 N79 Y83 Q96 S98 F115 Y122 T142 K145 W146 H154 Y155 Y158 E162 W166 Y170
External links
PDB RCSB:1ffo, PDBe:1ffo, PDBj:1ffo
PDBsum1ffo
PubMed12218131
UniProtP01899|HA11_MOUSE H-2 class I histocompatibility antigen, D-B alpha chain (Gene Name=H2-D1)

[Back to BioLiP]