BioLiP

Structure of PDB 7bf5 Chain C

Receptor sequence

>7bf5C (length=172) Species: 2697049 (Severe acute respiratory syndrome coronavirus 2) [Search protein sequence]

GHMVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGV
AGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPN
VNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT
NVYLAVFDKNLYDKLVSSFLEM

3D structure

PDB

7bf5 Structural Insights into Plasticity and Discovery of Remdesivir Metabolite GS-441524 Binding in SARS-CoV-2 Macrodomain.

Chain

Resolution

2.05 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

2.1.1.56: mRNA (guanine-N(7))-methyltransferase.
2.1.1.57: methyltransferase cap1.
2.7.7.48: RNA-directed RNA polymerase.
2.7.7.50: mRNA guanylyltransferase.
3.1.13.-
3.4.19.12: ubiquitinyl hydrolase 1.
3.4.22.-
3.4.22.69: SARS coronavirus main proteinase.
3.6.4.12: DNA helicase.
3.6.4.13: RNA helicase.
4.6.1.-

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	MG	C	G0 H1	G1 H2
BS02	A2R	C	D22 I23 A38 N40 G47 G48 V49 L126 S128 A129 G130 I131 F132 A154 F156	D23 I24 A39 N41 G48 G49 V50 L127 S129 A130 G131 I132 F133 A155 F157

External links

PDB	RCSB:7bf5, PDBe:7bf5, PDBj:7bf5
PDBsum	7bf5
PubMed	33850605
UniProt	P0DTD1\|R1AB_SARS2 Replicase polyprotein 1ab (Gene Name=rep)

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