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BioLiP

Structure of PDB 5tip Chain C

Receptor sequence
>5tipC (length=436) Species: 10506 (Paramecium bursaria Chlorella virus 1) [Search protein sequence]
AGGLSQLVAYGAQDVYLTGNPQITFFKTVYRRYTNFAIESIQQTINGSVG
FGNKVSTQISRNGDLITDIVVEFVLTKGGNGGTTYYPAEELLQDVELEIG
GQRIDKHYNDWFRTYDALFRMNDDRYNYRRMTDWVNNELVGAQKRFYVPL
IFFFNQTPGLALPLIALQYHEVKLYFTLASQVQGVNYNGSSAIAGAAQPT
MSVWVDYIFLDTQERTRFAQLPHEYLIEQLQFTGSETATPSATTQASQNI
RLNFNHPTKYLAWNFNNPTNYGQYTALANIPGACSGAGTAAATVTTPDYG
NTGTYNEQLAVLDSAKIQLNGQDRFATRKGSYFNKVQPYQSIGGVTPAGV
YLYSFALKPAGRQPSGTCNFSRIDNATLSLTYKTCSIDATSPAAVLGNTE
TVTANTATLLTALNIYAKNYNVLRIMSGMGGLAYAN
3D structure
PDB5tip Structure of the chlorovirus PBCV-1 major capsid glycoprotein determined by combining crystallographic and carbohydrate molecular modeling approaches.
ChainC
Resolution2.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 BGC C N280 A293 N279 A292
BS02 BGC C D299 N302 D298 N301
BS03 FUC C G82 N138 G81 N137
BS04 GLA C G82 G83 S286 G287 D299 G81 G82 S285 G286 D298
BS05 BGC C D389 G398 N399 D388 G397 N398
BS06 BGC C D389 N406 D388 N405
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
GO:0008289 lipid binding
Cellular Component
GO:0019028 viral capsid

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Molecular Function
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Cellular Component
External links
PDB RCSB:5tip, PDBe:5tip, PDBj:5tip
PDBsum5tip
PubMed29255015
UniProtP30328|MCP_PBCV1 Major capsid protein (Gene Name=A430L)

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