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BioLiP

Structure of PDB 6c5l Chain BV

Receptor sequence
>6c5lBV (length=101) Species: 274 (Thermus thermophilus) [Search protein sequence]
MFAIVKTGGKQYRVEPGLKLRVEKLDAEPGATVELPVLLLGGEKTVVGTP
VVEGASVVAEVLGHGRGKKILVSKFKAKVQYRRKKGHRQPYTELLIKEIR
G
3D structure
PDB6c5l Conformation of methylated GGQ in the Peptidyl Transferase Center during Translation Termination.
ChainBV
Resolution3.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna BV G8 G9 K10 E23 K68 K69 K74 K76 A77 K78 V79 Y81 R83 K84 K85 G86 H87 Q89 G8 G9 K10 E23 K68 K69 K74 K76 A77 K78 V79 Y81 R83 K84 K85 G86 H87 Q89
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:6c5l, PDBe:6c5l, PDBj:6c5l
PDBsum6c5l
PubMed29403017
UniProtP60492|RL21_THET8 Large ribosomal subunit protein bL21 (Gene Name=rplU)

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