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BioLiP

Structure of PDB 8x5i Chain B

Receptor sequence
>8x5iB (length=555) Species: 1053225 (Bacillus cereus VD045) [Search protein sequence]
MKFSNITIKNFRNFEKVNINLDNKNVIFGMNDIGKTNFLYALRFLLDKEI
RKFGFNKSDYHKHDTSKKIEIILTLDLSNYEKDEDTKKLISVVKGARTSA
NADVFYIALESKYDDKELYGNIILKWGSELDNLIDIPGRGNINALDNVFK
VIYINPLVDLDKLFAQNKKYIFEESQGNESDEGILNNIKSLTDQVNQQIG
EMTIIKGFQQEITSEYRSLKKEEVSIELKSEMAIKDGRRKMLSYSIYNYL
AKKKYEDKIVIYLIEEPEISLHRSMQIALSKQLFEQSTYKYFFLSTHSPE
LLYEMDNTRLIRVHSTEKVVCSSHMYNVEEAYGSVKKKLNKALSSALFAE
RVLLIEGPSEKILFEKVLDEVEPEYELNGGFLLEVGGTYFNHYVCTLNDL
GITHIIKTDNDLKSKKGKKGVYELLGLNRCLNLLGRENLDEITIDIPEDI
KGKKKKERLNERKKEIFKQYKNEVGEFLGERIYLSEIDLENDLYSAIGES
MKRIFENEDPVHYLQKSKLFNMVELVNNLSTKDCFDVFEHEKFACLKELV
GSDRG
3D structure
PDB8x5i nucleotide-sensing endonuclease with dsDNA
ChainB
Resolution3.01 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.-.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ATP B R12 N13 D32 I33 G34 K35 T36 N37 R12 N13 D32 I33 G34 K35 T36 N37
BS02 ATP B D259 G260 D236 G237
Gene Ontology
Molecular Function
GO:0004519 endonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0051607 defense response to virus

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Molecular Function
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Biological Process
External links
PDB RCSB:8x5i, PDBe:8x5i, PDBj:8x5i
PDBsum8x5i
PubMed38471529
UniProtJ8H9C1|GAJA_BACC6 Endonuclease GajA (Gene Name=gajA)

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