Structure of PDB 1cwp Chain B

Receptor sequence
>1cwpB (length=164) Species: 12303 (Cowpea chlorotic mottle virus) [Search protein sequence]
VVQPVIVEPIASGQGKAIKAWTGYSVSKWTASCAAAEAKVTSAITISLPN
ELSSERNKQLKVGRVLLWLGLLPSVSGTVKSCVTETQTTAAASFQVALAV
ADNSKDVVAAMYPEAFKGITLEQLAADLTIYLYSSAALTEGDVIVHLEVE
HVRPTFDDSFTPVY
3D structure
PDB1cwp Structures of the native and swollen forms of cowpea chlorotic mottle virus determined by X-ray crystallography and cryo-electron microscopy.
ChainB
Resolution3.2 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna B W47 E140 K143 W21 E114 K117
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005198 structural molecule activity
Cellular Component
GO:0019013 viral nucleocapsid
GO:0019028 viral capsid
GO:0039617 T=3 icosahedral viral capsid
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:1cwp, PDBe:1cwp, PDBj:1cwp
PDBsum1cwp
PubMed7743132
UniProtP03601|CAPSD_CCMV Capsid protein (Gene Name=ORF3b)

[Back to BioLiP]