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Structure of PDB 8evr Chain AJ

Receptor sequence

>8evrAJ (length=169) Species: 4932 (Saccharomyces cerevisiae)

QNPMRDLKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTVR
TFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFG
IDEHIDLGIKYDPSIGIFGMDFYVVMNRPGARVTRRKRCKGTVGNSHKTT
KEDTVSWFKQKYDADVLDK

3D structure

• PDB: 8evr Regulation of translation by ribosomal RNA pseudouridylation.
• Chain: AJ
• Resolution: 2.87 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	AJ	V18 N20 S22 G24 S48 R51 Y52 T56 F57 I65 H68 N95 S97 A98 T99 G103 F104 G105 D107 G124 D126 Y128 V130 K142	V13 N15 S17 G19 S43 R46 Y47 T51 F52 I60 H63 N90 S92 A93 T94 G98 F99 G100 D102 G119 D121 Y123 V125 K137
BS02	rna	AJ	N7 M9 R10 Q43 T44 V46 V69 T70 R72 G135 R137 R140 R141 R143 T147 G149 N150 S151 H152	N2 M4 R5 Q38 T39 V41 V64 T65 R67 G130 R132 R135 R136 R138 T142 G144 N145 S146 H147

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Tue May 13 06:40:46 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1709                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1710         else:

=> 1711             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1712     

   1713     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8evr', asym_id = 'AJ', title = 'Regulation of translation by ribosomal RNA pseudouridylation.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8evr', asym_id='AJ', title='Regulation of translation by ribosomal RNA pseudouridylation.')

    843 

    844     if go:

=>  845         display_go(go,uniprot,pdbid,asym_id)

    846     return pubmed,uniprot

    847 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '8evr', asym_id = 'AJ'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='8evr', asym_id='AJ')

    484         '''.replace("$namespace_link",namespace_link

    485           ).replace("$namespace",namespace

=>  486           ).replace("$uniprot",u

    487         ))

    488         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>