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BioLiP

Structure of PDB 6m5v Chain A

Receptor sequence
>6m5vA (length=585) Species: 10299 (Human alphaherpesvirus 1 strain 17) [Search protein sequence]
GDALRVPFLDFATATPKRHQTVVPGVGTLHDCCEHSPLFSAVARRLLFNS
LVPAQLKGRDFGGDHTAKLEFLAPELVRAVARLRFKECAPADVVPQRNAY
YSVLNTFQALHRSEAFRQLVHFVRDFAQLLKTSFRASSLTYGTLELFQKM
ILMHATYFLAAVLLGDHAEQVNTFLRLVFEIPLFSDAAVRHFRQRATVFL
VPRRHGKTWFLVPLIALSLASFRGIKIGYTAHIRTEPVFEEIDACLRGWF
GSARVDHVKGETISFSFPDGSRSTIVFASSHQDFNLLFVDEANFIRPDAV
QTIMGFLNQANCKIIFVSSTNTGKASTSFLYNLRGAADELLNVVTYICDD
HMPRVVTHTNATACSCPVLTKSAGERFLLYRPSTTTNSGLMAPDLYVYVD
PAFTANTRASGTGVAVVGRYRDDYIIFALEHFFLRALTGSAPADIARCVV
HSLTQVLALHPGAFRGVRVAVEGNSSQDSAVAIATHVHTEMHRGPELLFY
HCEPPGSAVLYPFFLLNKQKTPAFEHFIKKFNSGGVMASQEIVSATVRLQ
TDPVEYLLEQLNNLTSDDLMVAVIMAIYLAGPPHT
3D structure
PDB6m5v Architecture of the herpesvirus genome-packaging complex and implications for DNA translocation.
ChainA
Resolution4.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.-.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ADP A T200 E202 G263 K264 T265 W266 C430 T143 E145 G206 K207 T208 W209 C364
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0016787 hydrolase activity
Biological Process
GO:0051276 chromosome organization
Cellular Component
GO:0042025 host cell nucleus

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Molecular Function
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Cellular Component
External links
PDB RCSB:6m5v, PDBe:6m5v, PDBj:6m5v
PDBsum6m5v
PubMed32328903
UniProtP04295|TRM3_HHV11 Tripartite terminase subunit 3 (Gene Name=TRM3)

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