Structure of PDB 8wcl Chain 9
Receptor sequence
>8wcl9 (length=165) Species:
240364
(Chaetoceros neogracilis) [
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AFENELGAQPPLGFFDPLGLVEDGNQAKFDRLRYVELKHGRISMLAVVGY
LIEKAGIRLPGNISYDGTSFADIPDGFAALSKIPDAGLFQLFAFIGFLEV
FVMKDITGGEFVGDFRNGFIDFGWDSFDEETKLKKRAIELNQGRAAMMGI
LALMVHEKLGVSLLP
3D structure
PDB
8wcl
Structural and spectroscopic insights into fucoxanthin chlorophyll a/c-binding proteins of diatoms in diverse oligomeric states.
Chain
9
Resolution
2.65 Å
3D
structure
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Interaction with ligand
Site
#
Ligand
Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01
A86
9
Q38 A174 M177
Q9 A145 M148
BS02
A86
9
I71 N91 Y94 L120 I124 E128 M132
I42 N62 Y65 L91 I95 E99 M103
BS03
A86
9
F44 P46 S72 Y79 E82 G105 F106 L109 M176 I179
F15 P17 S43 Y50 E53 G76 F77 L80 M147 I150
BS04
A86
9
V131 I135 F144 R145 N146 F148 I149 F151
V102 I106 F115 R116 N117 F119 I120 F122
BS05
A86
9
M73 F151 Q171 A174 A175 L192
M44 F122 Q142 A145 A146 L163
BS06
A86
9
L80 A84 P194
L51 A55 P165
BS07
CLA
9
P39 P40 A166 I167 N170 Q171
P10 P11 A137 I138 N141 Q142
BS08
CLA
9
E34 G36 F43 F44 D45 L49 L61 R62 E65 H68 R173 M176 M177
E5 G7 F14 F15 D16 L20 L32 R33 E36 H39 R144 M147 M148
BS09
KC2
9
R60 L61 V64 H68
R31 L32 V35 H39
BS10
CLA
9
L74 A75 G78 I81 E82 R87 L88 F99 I102 M132
L45 A46 G49 I52 E53 R58 L59 F70 I73 M103
BS11
CLA
9
I92 S93 Y94 P113 A115 G116 Q119 L120 F123
I63 S64 Y65 P84 A86 G87 Q90 L91 F94
BS12
CLA
9
V64 K67 H68 I71 F121 I124 G125 E128
V35 K38 H39 I42 F92 I95 G96 E99
BS13
CLA
9
R70 M73 L74 F140 D143 F144 R145 F151 W153 F156 K164 E168
R41 M44 L45 F111 D114 F115 R116 F122 W124 F127 K135 E139
BS14
KC1
9
K164 I167 Q171
K135 I138 Q142
BS15
CLA
9
A181 V184 H185 L192
A152 V155 H156 L163
BS16
CLA
9
V129 F130
V100 F101
External links
PDB
RCSB:8wcl
,
PDBe:8wcl
,
PDBj:8wcl
PDBsum
8wcl
PubMed
39030906
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