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BioLiP

Structure of PDB 6l4u Chain 15

Receptor sequence
>6l4u15 (length=211) [Search protein sequence]
KAELEAIAKKANPTLGYYDPLSLADKDFWGKGNDATIAFLRQSEIKHGRI
AMFAFVGYIVQSNFVFPWAQTLAGAPHPSADLSPEAQWDAIPLGAKWQIF
AVISALELWDECGGGGVLPHYTKGRKPGQYPPFTLFRDNVHFVLDLYDPF
GFNKNMSEETKERRLVSELNNGRLAMLGIFGFLCADTIPGSVPLLNDIAI
PYSGQVMQPFE
3D structure
PDB6l4u Structure of photosystem I-light-harvesting supercomplex from a red-lineage diatom
Chain15
Resolution2.4 Å
3D
structure
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Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 CLA 15 L65 I68 A69 Y79 L82 L84 L101 E105 H108 R234 M237 L238 L4 I7 A8 Y18 L21 L23 L40 E44 H47 R173 M176 L177
BS02 CLA 15 F89 F100 L101 H108 F241 F28 F39 L40 H47 F180
BS03 CLA 15 F114 A115 G118 V121 Q122 V126 F127 H138 P139 I152 F53 A54 G57 V60 Q61 V65 F66 H77 P78 I91
BS04 CLA 15 Q131 L133 G155 A156 Q159 Q70 L72 G94 A95 Q98
BS05 CLA 15 G265 Q266 V267 E272 G204 Q205 V206 E211
BS06 CLA 15 F100 S104 K107 H108 I111 F161 I164 S165 E168 E172 F39 S43 K46 H47 I50 F100 I103 S104 E107 E111
BS07 CLA 15 R110 M113 K187 G189 Q190 Y191 Y208 K222 R225 L226 E229 R49 M52 K126 G128 Q129 Y130 Y147 K161 R164 L165 E168
BS08 CLA 15 N73 P74 T75 V227 S228 N231 N232 N12 P13 T14 V166 S167 N170 N171
BS09 CLA 15 S228 N232 S167 N171
BS10 CLA 15 I249 P250 G251 I188 P189 G190
BS11 CLA 15 W90 K92 F100 E172 H181 K184 W29 K31 F39 E111 H120 K123
BS12 CLA 15 A166 L167 F194 F197 V201 H202 V204 A105 L106 F133 F136 V140 H141 V143
BS13 CLA 15 F114 Y208 P210 F211 F53 Y147 P149 F150
BS14 A86 15 M113 F116 N232 L235 A236 G239 G242 M52 F55 N171 L174 A175 G178 G181
BS15 A86 15 Y79 P81 A115 G118 Q122 P145 W149 M237 I240 Y18 P20 A54 G57 Q61 P84 W88 M176 I179
BS16 A86 15 N231 L235 N170 L174
BS17 DD6 15 F89 W90 T248 Y263 S264 F28 W29 T187 Y202 S203
BS18 DD6 15 F114 A130 T132 I160 I164 L167 F53 A69 T71 I99 I103 L106
BS19 A86 15 F116 F243 F55 F182
BS20 A86 15 F161 Q266 F100 Q205
BS21 A86 15 L205 D206 L207 L144 D145 L146
BS22 A86 15 F161 S165 L169 F100 S104 L108
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Mon May 12 22:57:04 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1709                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1710         else:
=> 1711             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1712     
   1713     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6l4u', asym_id = '15', title = 'Structure of photosystem I-light-harvesting supercomplex from a red-lineage diatom'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6l4u', asym_id='15', title='Structure of photosystem I-light-harvesting supercomplex from a red-lineage diatom')
    843 
    844     if go:
=>  845         display_go(go,uniprot,pdbid,asym_id)
    846     return pubmed,uniprot
    847 
global display_go = <function display_go>, go = '0009765,0016020', uniprot = '', pdbid = '6l4u', asym_id = '15'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009765,0016020', uniprot='', pdbid='6l4u', asym_id='15')
    484         '''.replace("$namespace_link",namespace_link
    485           ).replace("$namespace",namespace
=>  486           ).replace("$uniprot",u
    487         ))
    488         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>