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Structure of PDB 9b4h Chain B Binding Site BS29

Receptor Information

>9b4h Chain B (length=1908) Species: 3055 (Chlamydomonas reinhardtii)

ATYTLTLDKLGPTVNPTTSDAVTFTATVASPDSTTAVFFTLDYGDGVTAE
TTRTTTGALSTTPTANLVSAGTYTVTYASIGTKFVTLRLYDSAVAPGVLL
ASKTVPIYVEDSTLTATLLQSGVPRLNLAFSGFKGRVSSSTANRADMWAT
IQLDTAPGVFESSRIFIGIAPTASTNYDFVIPDQVYNLEGAKTTVLRIYD
APVGGTLLRTFTPAAANAVYVVDPSKYVLTLTVGPTSVTTADQVTFTQTT
TEVSYSASATSPILQWRFNWDDPSVVETPLAYPDALTAASNFPTTATAVS
SAAASTFRYTSTGSKNARLRLYDGANNVIAEKIVVITVSNAGYTLALAKT
TADPVTTDDTIAFSAGAKHLSSTSQVWWTIDYGAGESSPRTALTMTNVGA
AAPNAIASLSNQYTSGGTKLATLRIYDRDGVGANTGLLLASTTVTFTVTP
VLYALESAVEPFSPIATVAAKWSFRIQRSKATPAGVTESIKCAFFGADTG
TAPADLAAWLTAANGAGGLTATILPSSIPSDIISFTRTYAAAAASLQGKL
QCFIGSTPLWDPYYPTPVFQVLAAAPTYTLSASVTPAVVPVDTATLWTYN
IIRSVPVPAGGPSLPILCSFWDGKTGAAPTTDAGWAALAGSANGKGTSMA
PGSTTATCSFTPSYSTTGTATPTLQLIQNSFALDAATTVGFLSPVYTAPA
FATVTAASYTISSYLNPVTPVAGGAAAVWRIVITRNAAVTASAKTLTCQM
PDNGQGGSPADVTADIAVGGTTTVCVFSIAGYTTATPGPYFATVNVVDGA
VTTSHITKNFTVLASGTTAPTYAVTSVVSPATPVKVSTPVTYTFTITRTT
AVPAGGIPQPIICEFFNGEGTAPASAAAYWRVSTTIPDADTVVAVMAPGE
TTTTCTFTTYYTTVSAGGFTAKLMVFGESATAAPLLTSLSVTPSQLLAAV
HSFATPMVVAAAVVAVESTTISPNYNPTTPYTNIPTYFTFTLLRDPPVPP
SASSGVQFACALYTGQNVNPASAPSAITDAVYKTFTDVTTAVATDANYFA
DQQLRVVTMAPGTGRVSCTFPTLYAAAGPFSPKFFVFEYASSTVGANALA
VADTVTSLTSFTTQAAPTFITGPTNVPQRVPLPKGFRTTCFDGYELIFSN
DNYTNGVRVAVDAYPYPVGQCRKCPGGTATMDGYRCIPCPSGYWSNEGAR
ECTACPAGTIAKPAALTARAKYSIDPTTYHFVTHLAMGPESCKKCPKGYF
QPNIAGTVCLPCPSGFVSTSGATGCTACSEGTYHTDGVGTTTPGEATSLD
TTDTFGSIYPIIPNTCRQCPANTYLPLRGQAAIASMNLAAVSSATPCRPC
EDGTWSKAGAAGCQKCPPGTYRNTWFSGQLGSPFITADGVPVATTLTELG
SGCSQCPPGTYAPTFGMSVCLPCPAGTFASAPGATACQQCKPGTNSLMGD
RTQQMALVVTNAANDFPALRAYTISGMVAGPAYAKPIVTGPDTNFFMAGK
SETCSTNLPGYYTDVDGLPIQLPCKPGTFMPFDTATANLLDTGLTVDGTQ
CYTCQTGTFNDEFSQPVCKACWSGSFASKRGLPTCEIAQPGTFTNVAAAA
NATFNTATLIPTGLVKGAQAPTPCGMGYFQSSAETTTCTACAVGTYADQA
GLAACKPCQPGRYQNSIGQRVCKPCDMGTYSRYGGELCTKCPAGTVASKT
GSSQCTPCAAGFYANAPDSATSCRACPRGYYGPYSGAYADNLGDEFEGPR
GCYKCPYDFFADRPGVRQCTACPPLDLGGGNLVEQCTEDLGSQRCKPCSL
LSKPKTARTEQSPPPPSPSPPPPPPPSPRPPSPNPPSPRPPSPAPPSPNP
PPTSPPPSPPPSPPPPRPPPPPPPPPSPPPPNRSPPPPPPASSAINPGGG
VNQNGDPV

Ligand information

• Ligand ID: A1AIO
• InChI: InChI=1S/C6H12O6/c7-1-2(8)5-3(9)4(10)6(11)12-5/h2-11H,1H2/t2-,3-,4-,5-,6-/m0/s1
• InChIKey: AVVWPBAENSWJCB-RUTHBDMASA-N
• SMILES:
  OpenEye OEToolkits 2.0.7: C(C(C1C(C(C(O1)O)O)O)O)O
  CACTVS 3.385: OC[CH](O)[CH]1O[CH](O)[CH](O)[CH]1O
  ACDLabs 12.01: OC1C(OC(O)C1O)C(O)CO
  CACTVS 3.385: OC[C@H](O)[C@@H]1O[C@H](O)[C@@H](O)[C@@H]1O
  OpenEye OEToolkits 2.0.7: C([C@@H]([C@H]1[C@H]([C@@H](C(O1)O)O)O)O)O
• Formula: C6 H12 O6
• Name: beta-L-glucofuranose
• PDB chain: 9b4h Chain B Residue 2034

Receptor-Ligand Complex Structure

Structure summary

• PDB: 9b4h Mastigoneme structure reveals insights into the O-linked glycosylation code of native hydroxyproline-rich helices.
• Resolution: 3.1 Å
• Binding residue (original residue number in PDB): P1914 P1916
• Binding residue (residue number reindexed from 1): P1872 P1874
• Annotation score: 1

External links

• PDB: RCSB:9b4h, PDBe:9b4h, PDBj:9b4h
• PDBsum: 9b4h
• PubMed: 38552624
• UniProt: A8J9H7

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