Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only

Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

Structure of PDB 8wa2 Chain B Binding Site BS08

Receptor Information

>8wa2 Chain B (length=1907) Species: 3055 (Chlamydomonas reinhardtii)

TYTLTLDKLGPTVNPTTSDAVTFTATVASPDSTTAVFFTLDYGDGVTAET
TRTTTGALSTTPTANLVSAGTYTVTYASIGTKFVTLRLYDSAVAPGVLLA
SKTVPIYVEDSTLTATLLQSGVPRLNLAFSGFKGRVSSSTANRADMWATI
QLDTAPGVFESSRIFIGIAPTASTNYDFVIPDQVYNLEGAKTTVLRIYDA
PVGGTLLRTFTPAAANAVYVVDPSKYVLTLTVGPTSVTTADQVTFTQTTT
EVSYSASATSPILQWRFNWDDPSVVETPLAYPDALTAASNFPTTATAVSS
AAASTFRYTSTGSKNARLRLYDGANNVIAEKIVVITVSNAGYTLALAKTT
ADPVTTDDTIAFSAGAKHLSSTSQVWWTIDYGAGESSPRTALTMTNVGAA
APNAIASLSNQYTSGGTKLATLRIYDRDGVGANTGLLLASTTVTFTVTPV
LYALESAVEPFSPIATVAAKWSFRIQRSKATPAGVTESIKCAFFGADTGT
APADLAAWLTAANGAGGLTATILPSSIPSDIISFTRTYAAAAASLQGKLQ
CFIGSTPLWDPYYPTPVFQVLAAAPTYTLSASVTPAVVPVDTATLWTYNI
IRSVPVPAGGPSLPILCSFWDGKTGAAPTTDAGWAALAGSANGKGTSMAP
GSTTATCSFTPSYSTTGTATPTLQLIQNSFALDAATTVGFLSPVYTAPAF
ATVTAASYTISSYLNPVTPVAGGAAAVWRIVITRNAAVTASAKTLTCQMP
DNGQGGSPADVTADIAVGGTTTVCVFSIAGYTTATPGPYFATVNVVDGAV
TTSHITKNFTVLASGTTAPTYAVTSVVSPATPVKVSTPVTYTFTITRTTA
VPAGGIPQPIICEFFNGEGTAPASAAAYWRVSTTIPDADTVVAVMAPGET
TTTCTFTTYYTTVSAGGFTAKLMVFGESATAAPLLTSLSVTPSQLLAAVH
SFATPMVVAAAVVAVESTTISPNYNPTTPYTNIPTYFTFTLLRDPPVPPS
ASSGVQFACALYTGQNVNPASAPSAITDAVYKTFTDVTTAVATDANYFAD
QQLRVVTMAPGTGRVSCTFPTLYAAAGPFSPKFFVFEYASSTVGANALAV
ADTVTSLTSFTTQAAPTFITGPTNVPQRVPLPKGFRTTCFDGYELIFSND
NYTNGVRVAVDAYPYPVGQCRKCPGGTATMDGYRCIPCPSGYWSNEGARE
CTACPAGTIAKPAALTARAKYSIDPTTYHFVTHLAMGPESCKKCPKGYFQ
PNIAGTVCLPCPSGFVSTSGATGCTACSEGTYHTDGVGTTTPGEATSLDT
TDTFGSIYPIIPNTCRQCPANTYLPLRGQAAIASMNLAAVSSATPCRPCE
DGTWSKAGAAGCQKCPPGTYRNTWFSGQLGSPFITADGVPVATTLTELGS
GCSQCPPGTYAPTFGMSVCLPCPAGTFASAPGATACQQCKPGTNSLMGDR
TQQMALVVTNAANDFPALRAYTISGMVAGPAYAKPIVTGPDTNFFMAGKS
ETCSTNLPGYYTDVDGLPIQLPCKPGTFMPFDTATANLLDTGLTVDGTQC
YTCQTGTFNDEFSQPVCKACWSGSFASKRGLPTCEIAQPGTFTNVAAAAN
ATFNTATLIPTGLVKGAQAPTPCGMGYFQSSAETTTCTACAVGTYADQAG
LAACKPCQPGRYQNSIGQRVCKPCDMGTYSRYGGELCTKCPAGTVASKTG
SSQCTPCAAGFYANAPDSATSCRACPRGYYGPYSGAYADNLGDEFEGPRG
CYKCPYDFFADRPGVRQCTACPPLDLGGGNLVEQCTEDLGSQRCKPCSLL
SKPKTARTEQSPPPPSPSPPPPPPPSPRPPSPNPPSPRPPSPAPPSPNPP
PTSPPPSPPPSPPPPRPPPPPPPPPSPPPPNRSPPPPPPASSAINPGGGV
NQNGDPV

Ligand information

• Ligand ID: FUB
• InChI: InChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4+,5-/m0/s1
• InChIKey: HMFHBZSHGGEWLO-KLVWXMOXSA-N
• SMILES:
  CACTVS 3.341: OC[C@@H]1O[C@H](O)[C@H](O)[C@H]1O
  OpenEye OEToolkits 1.5.0: C([C@H]1[C@@H]([C@H]([C@H](O1)O)O)O)O
  OpenEye OEToolkits 1.5.0: C(C1C(C(C(O1)O)O)O)O
  CACTVS 3.341: OC[CH]1O[CH](O)[CH](O)[CH]1O
  ACDLabs 10.04: OC1C(OC(O)C1O)CO
• Formula: C5 H10 O5
• Name: beta-L-arabinofuranose;
  beta-L-arabinose;
  L-arabinose;
  arabinose
• ZINC: ZINC000004097027
• PDB chain: 8wa2 Chain XA Residue 2

Receptor-Ligand Complex Structure

Structure summary

• PDB: 8wa2 Structure-guided discovery of protein and glycan components in native mastigonemes
• Resolution: 3.0 Å
• Binding residue (original residue number in PDB): S1874 P1875
• Binding residue (residue number reindexed from 1): S1831 P1832
• Annotation score: 4

External links

• PDB: RCSB:8wa2, PDBe:8wa2, PDBj:8wa2
• PDBsum: 8wa2
• PubMed: 38552612
• UniProt: A8J9H7

zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417